Difference between revisions of "APIGNAR-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9549 RXN-9549] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/3....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9549 RXN-9549] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Naringenin chalcone isomerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.2.14 EC-3.1.2.14]
+
** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[Palmitoyl-ACPs]][c] '''=>''' 1 [[PALMITATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ACP]][c]
+
** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a palmitoyl-[acp][c] '''=>''' 1 palmitate[c] '''+''' 1 H+[c] '''+''' 1 a holo-[acyl-carrier protein][c]
+
** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00008856001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7746]], mycobacterial sulfolipid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7746 PWY-7746]
+
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
−
** '''22''' reactions found over '''31''' reactions in the full pathway
+
** '''2''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30130 30130]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01706 R01706]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11650 P11650]
 +
** [http://www.uniprot.org/uniprot/P11651 P11651]
 +
** [http://www.uniprot.org/uniprot/P41088 P41088]
 +
** [http://www.uniprot.org/uniprot/P14298 P14298]
 +
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
 +
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
 +
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
 +
** [http://www.uniprot.org/uniprot/P28012 P28012]
 +
** [http://www.uniprot.org/uniprot/P41089 P41089]
 +
** [http://www.uniprot.org/uniprot/O81980 O81980]
 +
** [http://www.uniprot.org/uniprot/O22604 O22604]
 +
** [http://www.uniprot.org/uniprot/O22651 O22651]
 +
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.1.2.14}}
+
{{#set: common name=Naringenin chalcone isomerase}}
−
{{#set: in pathway=PWY-7746|PWY-5971|PWY-5994}}
+
{{#set: ec number=EC-5.5.1.6}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: gene associated=CHC_T00008856001_1}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: in pathway=PWY-7397|PWY1F-FLAVSYN|PWY-6787}}
−
{{#set: reconstruction source=added for gapfilling}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 14:53, 23 May 2018

Reaction APIGNAR-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Naringenin chalcone isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2',4,4',6'-tetrahydroxychalcone[c] => 1 (2S)-naringenin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7397, naringenin biosynthesis (engineered): PWY-7397
    • 3 reactions found over 4 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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