Difference between revisions of "RXN-9623"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] == * direction: ** LEFT-TO-RIGHT * common name: ** long-chain-fatty-acid-CoA l...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] == * direction: ** LEFT-TO-RIGHT * common name: ** long-chain-fatty-acid-CoA lig...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
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== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-3617]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-10267]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PALMITATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 decanoate[c] '''=>''' 1 diphosphate[c] '''+''' 1 decanoyl-CoA[c] '''+''' 1 AMP[c]
+
** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 palmitate[c] '''=>''' 1 diphosphate[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008500001_1]]
+
* Gene: [[CHC_T00009428001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
* [[CHC_T00008811001_1]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00008811001_1]]
−
* [[CHC_T00009428001]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** ORIGINAL_GENOME
+
* Gene: [[CHC_T00008811001]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-original_genome]]
−
* [[CHC_T00008811001]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** ORIGINAL_GENOME
+
* Gene: [[CHC_T00008500001_1]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00009428001_1]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
* [[CHC_T00008160001_1]]
+
* Gene: [[CHC_T00008160001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009428001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
+
* [[PWY-5972]], stearate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-arabidopsis_thaliana]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30754 30754]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01280 R01280]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: common name=long-chain-fatty-acid-CoA ligase}}
 
{{#set: common name=long-chain-fatty-acid-CoA ligase}}
 
{{#set: ec number=EC-6.2.1.3}}
 
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: gene associated=CHC_T00008500001_1|CHC_T00008811001_1|CHC_T00009428001|CHC_T00008811001|CHC_T00009428001_1|CHC_T00008160001_1}}
+
{{#set: gene associated=CHC_T00009428001|CHC_T00008811001_1|CHC_T00008811001|CHC_T00008500001_1|CHC_T00008160001_1|CHC_T00009428001_1}}
−
{{#set: in pathway=PWY-7094}}
+
{{#set: in pathway=PWY-5972|PWY-5971}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 15:02, 23 May 2018

Reaction RXN-9623

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 palmitate[c] => 1 diphosphate[c] + 1 palmitoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5972, stearate biosynthesis I (animals and fungi): PWY-5972
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-9623&oldid=12975"