Difference between revisions of "RXN-13307"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=NAD NAD] == * smiles: ** C1(C(=CC=C[N+]=1C5(OC(COP(=O)([O-])OP(=O)([O-])OCC2(OC(C(O)C(O)2)N4(C=...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13307 RXN-13307] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=NAD NAD] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13307 RXN-13307] ==
* smiles:
+
* direction:
** C1(C(=CC=C[N+]=1C5(OC(COP(=O)([O-])OP(=O)([O-])OCC2(OC(C(O)C(O)2)N4(C=NC3(C(N)=NC=NC=34))))C(O)C(O)5))C(N)=O)
+
** LEFT-TO-RIGHT
* inchi key:
+
* ec number:
** InChIKey=BAWFJGJZGIEFAR-NNYOXOHSSA-M
+
** [http://enzyme.expasy.org/EC/1.3.1.93 EC-1.3.1.93]
* common name:
+
** NAD+
+
* molecular weight:
+
** 662.422   
+
 
* Synonym(s):
 
* Synonym(s):
** NAD+
 
** beta-nicotinamide adenine dinucleotide
 
** coenzyme I
 
** diphosphopyridine nucleotide
 
** diphosphopyridine nucleotide oxidized
 
** nicotinamide adenine dinucleotide
 
** nicotinamide adenine dinucleotide oxidized
 
** NAD-oxidized
 
** NAD-ox
 
** DPN+
 
** DPN-ox
 
** DPN
 
** β-nicotinamide adenine dinucleotide
 
** NAD
 
** β-NAD+
 
  
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
* [[RXN-8001]]
+
* With identifiers:
* [[RXN-4142]]
+
** 1 [[CPD-14281]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[CPD-10279]][c] '''+''' 1 [[NADP]][c]
* [[THREODEHYD-RXN]]
+
* With common name(s):
* [[RXN-14249]]
+
** 1 trans-docos-2-enoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 docosanoyl-CoA[c] '''+''' 1 NADP+[c]
* [[RXN-12490]]
+
 
* [[RXN66-479]]
+
== Genes associated with this reaction  ==
* [[RXN-17794]]
+
== Pathways  ==
* [[RXN-17777]]
+
* [[PWY-7036]], very long chain fatty acid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7036 PWY-7036]
* [[RXN66-476-CPD-388/NAD/WATER//CPD-8462/NADH/PROTON.40.]]
+
** '''8''' reactions found over '''16''' reactions in the full pathway
* [[RXN-17790]]
+
== Reconstruction information  ==
* [[RXN66-476-CPD-14719/NAD/WATER//CPD-7830/NADH/PROTON.42.]]
+
* Category: [[gap-filling]]
* [[RXN-12705]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
* [[NADPYROPHOSPHAT-RXN]]
+
*** Tool: [[meneco]]
* [[1.8.1.4-RXN]]
+
**** Comment: [[added for gapfilling]]
* [[RXN66-3]]
+
* [[RXN-17798]]
+
* [[PREPHENATEDEHYDROG-RXN]]
+
* [[RXN-905]]
+
* [[RXN-10715]]
+
* [[ISOCITRATE-DEHYDROGENASE-NAD+-RXN]]
+
* [[RXN-9758]]
+
* [[RXN-10912]]
+
* [[RXN-10917]]
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* [[RXN-12507]]
+
* [[PYRUVDEH-RXN]]
+
* [[RXN-7682]]
+
* [[RXN-17808]]
+
* [[RXN-12750]]
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* [[2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN]]
+
* [[RXN66-472]]
+
* [[PYRNUTRANSHYDROGEN-RXN]]
+
* [[RXN6666-5]]
+
* [[2OXOGLUTARATEDEH-RXN]]
+
* [[RXN-37]]
+
* [[RXN-7745]]
+
* [[OHACYL-COA-DEHYDROG-RXN]]
+
* [[NAD-KIN-RXN]]
+
* [[RXN-3443]]
+
* [[RXN66-342]]
+
* [[RXN-1884]]
+
* [[HISTALDEHYD-RXN]]
+
* [[RXN-10698]]
+
* [[RXN66-476]]
+
* [[RXN-12693]]
+
* [[RXN-17781]]
+
* [[RXN-14271]]
+
* [[RXN66-353]]
+
* [[1.1.1.39-RXN]]
+
* [[RXN-13158]]
+
* [[UGD-RXN]]
+
* [[ExchangeDeadEnd_NAD]]
+
* [[RXN-10702]]
+
* [[RXN-10703]]
+
* [[RXN-10780]]
+
* [[RXN-10089]]
+
* [[RXN-12789]]
+
* [[ALDHDEHYDROG-RXN]]
+
* [[RXN0-1132]]
+
* [[RXN-9336]]
+
* [[RXN-17786]]
+
* [[2-KETO-ADIPATE-DEHYDROG-RXN]]
+
* [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]]
+
* [[TransportSeed_NAD]]
+
* [[PYRIDOXAL-4-DEHYDROGENASE-RXN]]
+
* [[R222-RXN]]
+
* [[1.2.1.25-RXN]]
+
* [[RXN-13414]]
+
* [[RXN66-478]]
+
* [[RXN-11245]]
+
== Reaction(s) known to produce the compound ==
+
* [[RXN-11195]]
+
* [[TRANS-RXN0-277]]
+
* [[RXN-16632]]
+
* [[RXN-10062]]
+
* [[RXN-5424]]
+
* [[RXN-11478]]
+
* [[1.5.1.20-RXN]]
+
* [[RXN-3661]]
+
* [[RXN3O-4113]]
+
* [[DLACTDEHYDROGNAD-RXN]]
+
* [[RXN1G-488]]
+
* [[RXN1G-526]]
+
* [[RXN-9659]]
+
* [[RXN-9658]]
+
* [[RXN-10911]]
+
* [[TRANS-2-ENOYL-COA-REDUCTASE-NAD+-RXN-CPD-10280/NAD//CPD-14282/NADH/PROTON.37.]]
+
* [[RXN-11482]]
+
* [[RXN-9635]]
+
* [[ENOYL-ACP-REDUCT-NADH-RXN]]
+
* [[RXN-10657]]
+
* [[RXN-7694]]
+
* [[1.1.1.8-RXN]]
+
* [[GLYCERATE-DEHYDROGENASE-RXN]]
+
* [[RXN-16628]]
+
* [[RXN1F-152]]
+
* [[RXN-16620]]
+
* [[RXN-7700]]
+
* [[RXN-16624]]
+
* [[FERRIC-CHELATE-REDUCTASE-RXN]]
+
* [[RXN-7706]]
+
* [[1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44.]]
+
* [[TRANS-2-ENOYL-COA-REDUCTASE-NAD+-RXN-CPD-10279/NAD//CPD-14281/NADH/PROTON.37.]]
+
* [[RXN0-2145]]
+
* [[RXN1G-395]]
+
* [[BIOMASS-RXN]]
+
* [[CYTOCHROME-B5-REDUCTASE-RXN]]
+
* [[1.6.5.4-RXN]]
+
* [[HOMOSERDEHYDROG-RXN-HOMO-SER/NAD//L-ASPARTATE-SEMIALDEHYDE/NADH/PROTON.51.]]
+
* [[RXN-9662]]
+
* [[RXN-9663]]
+
* [[RXN-9660]]
+
* [[RXN-9661]]
+
* [[RXN-9558]]
+
* [[RXN-12559]]
+
* [[RXN-12558]]
+
* [[RXN-12570]]
+
* [[RXN-5822]]
+
* [[RXN-9657]]
+
* [[RXN-13417]]
+
* [[RXN-10661]]
+
* [[TransportSeed_NAD]]
+
* [[ExchangeDeadEnd_NAD]]
+
* [[NAD-SYNTH-GLN-RXN]]
+
* [[RXN-10781]]
+
* [[RXN-12568-HEXANAL/CO-A/NAD//HEXANOYL-COA/NADH/PROTON.43.]]
+
== Reaction(s) of unknown directionality ==
+
* [[ExchangeSeed_NAD]]
+
* [[NADH-DEHYDROG-A-RXN]]
+
* [[RXN-7719]]
+
* [[PHENDEHYD-RXN]]
+
* [[RXN0-901]]
+
* [[D-THREO-ALDOSE-1-DEHYDROGENASE-RXN]]
+
* [[RXN-7644]]
+
* [[RXN-7716]]
+
* [[LONG-CHAIN-ALCOHOL-DEHYDROGENASE-RXN-CPD-348/NAD/WATER//PALMITATE/NADH/PROTON.41.]]
+
* [[LONG-CHAIN-ALCOHOL-DEHYDROGENASE-RXN-CPD-7873/NAD/WATER//STEARIC_ACID/NADH/PROTON.45.]]
+
* [[IMP-DEHYDROG-RXN]]
+
* [[RXN-14280]]
+
* [[GLYCOLATE-REDUCTASE-RXN]]
+
* [[HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN]]
+
* [[HEXADECANOL-DEHYDROGENASE-RXN]]
+
* [[RXN-16654]]
+
* [[NADH-DEHYDROGENASE-RXN]]
+
* [[RXN-8629]]
+
* [[RXN-12448]]
+
* [[RXN-11662]]
+
* [[RXN-12303-PLASTOQUINONE-9/NADH/PROTON//CPD-12829/NAD.43.]]
+
* [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
+
* [[L-IDITOL-2-DEHYDROGENASE-RXN]]
+
* [[RXN-10915]]
+
* [[GLUTAMATE-DEHYDROGENASE-RXN]]
+
* [[RETINOL-DEHYDROGENASE-RXN]]
+
* [[HISTOLDEHYD-RXN]]
+
* [[1.6.99.5-RXN-NADH/PLASTOQUINONE-9/PROTON//NAD/CPD-12829.43.]]
+
* [[RXN-9510]]
+
* [[MALATE-DEH-RXN]]
+
* [[2KETO-3METHYLVALERATE-RXN]]
+
* [[RXN-7657]]
+
* [[ALCOHOL-DEHYDROG-RXN]]
+
* [[RXN-161]]
+
* [[RXN-1302]]
+
* [[RXN-7693]]
+
* [[RXN66-350]]
+
* [[3-ISOPROPYLMALDEHYDROG-RXN]]
+
* [[BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN]]
+
* [[1.1.1.145-RXN]]
+
* [[BADH-RXN]]
+
* [[CYSTINE-REDUCTASE-NADH-RXN]]
+
* [[RXN-16133]]
+
* [[GAPOXNPHOSPHN-RXN]]
+
* [[PGLYCDEHYDROG-RXN]]
+
* [[GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56.]]
+
* [[BUTANAL-DEHYDROGENASE-RXN-BUTANAL/CO-A/NAD//BUTYRYL-COA/NADH/PROTON.42.]]
+
* [[1.3.1.9-RXN]]
+
* [[RXN0-276]]
+
* [[RXN0-2044]]
+
* [[2.4.2.31-RXN]]
+
* [[MYO-INOSITOL-2-DEHYDROGENASE-RXN]]
+
* [[RXN-14225]]
+
* [[RXN-14224]]
+
* [[RXN-13198]]
+
* [[RXN-16655]]
+
* [[RXN-16656]]
+
* [[ACETALD-DEHYDROG-RXN]]
+
* [[RXN-16653]]
+
 
== External links  ==
 
== External links  ==
* CAS : 53-84-9
+
{{#set: direction=LEFT-TO-RIGHT}}
* METABOLIGHTS : MTBLC57540
+
{{#set: ec number=EC-1.3.1.93}}
* PUBCHEM:
+
{{#set: in pathway=PWY-7036}}
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15938971 15938971]
+
{{#set: reconstruction category=gap-filling}}
* HMDB : HMDB00902
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
* LIGAND-CPD:
+
{{#set: reconstruction tool=meneco}}
** [http://www.genome.jp/dbget-bin/www_bget?C00003 C00003]
+
{{#set: reconstruction comment=added for gapfilling}}
* CHEMSPIDER:
+
** [http://www.chemspider.com/Chemical-Structure.10239196.html 10239196]
+
* CHEBI:
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57540 57540]
+
* BIGG : nad
+
{{#set: smiles=C1(C(=CC=C[N+]=1C5(OC(COP(=O)([O-])OP(=O)([O-])OCC2(OC(C(O)C(O)2)N4(C=NC3(C(N)=NC=NC=34))))C(O)C(O)5))C(N)=O)}}
+
{{#set: inchi key=InChIKey=BAWFJGJZGIEFAR-NNYOXOHSSA-M}}
+
{{#set: common name=NAD+}}
+
{{#set: molecular weight=662.422    }}
+
{{#set: common name=NAD+|beta-nicotinamide adenine dinucleotide|coenzyme I|diphosphopyridine nucleotide|diphosphopyridine nucleotide oxidized|nicotinamide adenine dinucleotide|nicotinamide adenine dinucleotide oxidized|NAD-oxidized|NAD-ox|DPN+|DPN-ox|DPN|β-nicotinamide adenine dinucleotide|NAD|β-NAD+}}
+
{{#set: consumed by=RXN-8001|RXN-4142|THREODEHYD-RXN|RXN-14249|RXN-12490|RXN66-479|RXN-17794|RXN-17777|RXN66-476-CPD-388/NAD/WATER//CPD-8462/NADH/PROTON.40.|RXN-17790|RXN66-476-CPD-14719/NAD/WATER//CPD-7830/NADH/PROTON.42.|RXN-12705|NADPYROPHOSPHAT-RXN|1.8.1.4-RXN|RXN66-3|RXN-17798|PREPHENATEDEHYDROG-RXN|RXN-905|RXN-10715|ISOCITRATE-DEHYDROGENASE-NAD+-RXN|RXN-9758|RXN-10912|RXN-10917|RXN-12507|PYRUVDEH-RXN|RXN-7682|RXN-17808|RXN-12750|2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN|RXN66-472|PYRNUTRANSHYDROGEN-RXN|RXN6666-5|2OXOGLUTARATEDEH-RXN|RXN-37|RXN-7745|OHACYL-COA-DEHYDROG-RXN|NAD-KIN-RXN|RXN-3443|RXN66-342|RXN-1884|HISTALDEHYD-RXN|RXN-10698|RXN66-476|RXN-12693|RXN-17781|RXN-14271|RXN66-353|1.1.1.39-RXN|RXN-13158|UGD-RXN|ExchangeDeadEnd_NAD|RXN-10702|RXN-10703|RXN-10780|RXN-10089|RXN-12789|ALDHDEHYDROG-RXN|RXN0-1132|RXN-9336|RXN-17786|2-KETO-ADIPATE-DEHYDROG-RXN|3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN|TransportSeed_NAD|PYRIDOXAL-4-DEHYDROGENASE-RXN|R222-RXN|1.2.1.25-RXN|RXN-13414|RXN66-478|RXN-11245}}
+
{{#set: produced by=RXN-11195|TRANS-RXN0-277|RXN-16632|RXN-10062|RXN-5424|RXN-11478|1.5.1.20-RXN|RXN-3661|RXN3O-4113|DLACTDEHYDROGNAD-RXN|RXN1G-488|RXN1G-526|RXN-9659|RXN-9658|RXN-10911|TRANS-2-ENOYL-COA-REDUCTASE-NAD+-RXN-CPD-10280/NAD//CPD-14282/NADH/PROTON.37.|RXN-11482|RXN-9635|ENOYL-ACP-REDUCT-NADH-RXN|RXN-10657|RXN-7694|1.1.1.8-RXN|GLYCERATE-DEHYDROGENASE-RXN|RXN-16628|RXN1F-152|RXN-16620|RXN-7700|RXN-16624|FERRIC-CHELATE-REDUCTASE-RXN|RXN-7706|1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44.|TRANS-2-ENOYL-COA-REDUCTASE-NAD+-RXN-CPD-10279/NAD//CPD-14281/NADH/PROTON.37.|RXN0-2145|RXN1G-395|BIOMASS-RXN|CYTOCHROME-B5-REDUCTASE-RXN|1.6.5.4-RXN|HOMOSERDEHYDROG-RXN-HOMO-SER/NAD//L-ASPARTATE-SEMIALDEHYDE/NADH/PROTON.51.|RXN-9662|RXN-9663|RXN-9660|RXN-9661|RXN-9558|RXN-12559|RXN-12558|RXN-12570|RXN-5822|RXN-9657|RXN-13417|RXN-10661|TransportSeed_NAD|ExchangeDeadEnd_NAD|NAD-SYNTH-GLN-RXN|RXN-10781|RXN-12568-HEXANAL/CO-A/NAD//HEXANOYL-COA/NADH/PROTON.43.}}
+
{{#set: consumed or produced by=ExchangeSeed_NAD|NADH-DEHYDROG-A-RXN|RXN-7719|PHENDEHYD-RXN|RXN0-901|D-THREO-ALDOSE-1-DEHYDROGENASE-RXN|RXN-7644|RXN-7716|LONG-CHAIN-ALCOHOL-DEHYDROGENASE-RXN-CPD-348/NAD/WATER//PALMITATE/NADH/PROTON.41.|LONG-CHAIN-ALCOHOL-DEHYDROGENASE-RXN-CPD-7873/NAD/WATER//STEARIC_ACID/NADH/PROTON.45.|IMP-DEHYDROG-RXN|RXN-14280|GLYCOLATE-REDUCTASE-RXN|HYDROXYMETHYLGLUTARYL-COA-REDUCTASE-RXN|HEXADECANOL-DEHYDROGENASE-RXN|RXN-16654|NADH-DEHYDROGENASE-RXN|RXN-8629|RXN-12448|RXN-11662|RXN-12303-PLASTOQUINONE-9/NADH/PROTON//CPD-12829/NAD.43.|ALCOHOL-DEHYDROG-GENERIC-RXN|L-IDITOL-2-DEHYDROGENASE-RXN|RXN-10915|GLUTAMATE-DEHYDROGENASE-RXN|RETINOL-DEHYDROGENASE-RXN|HISTOLDEHYD-RXN|1.6.99.5-RXN-NADH/PLASTOQUINONE-9/PROTON//NAD/CPD-12829.43.|RXN-9510|MALATE-DEH-RXN|2KETO-3METHYLVALERATE-RXN|RXN-7657|ALCOHOL-DEHYDROG-RXN|RXN-161|RXN-1302|RXN-7693|RXN66-350|3-ISOPROPYLMALDEHYDROG-RXN|BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN|1.1.1.145-RXN|BADH-RXN|CYSTINE-REDUCTASE-NADH-RXN|RXN-16133|GAPOXNPHOSPHN-RXN|PGLYCDEHYDROG-RXN|GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56.|BUTANAL-DEHYDROGENASE-RXN-BUTANAL/CO-A/NAD//BUTYRYL-COA/NADH/PROTON.42.|1.3.1.9-RXN|RXN0-276|RXN0-2044|2.4.2.31-RXN|MYO-INOSITOL-2-DEHYDROGENASE-RXN|RXN-14225|RXN-14224|RXN-13198|RXN-16655|RXN-16656|ACETALD-DEHYDROG-RXN|RXN-16653}}
+

Latest revision as of 15:35, 23 May 2018

Reaction RXN-13307

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 trans-docos-2-enoyl-CoA[c] + 1 H+[c] + 1 NADPH[c] => 1 docosanoyl-CoA[c] + 1 NADP+[c]

Genes associated with this reaction

Pathways

  • PWY-7036, very long chain fatty acid biosynthesis II: PWY-7036
    • 8 reactions found over 16 reactions in the full pathway

Reconstruction information

External links