Difference between revisions of "CYTIDINE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydroli...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CYTIDINE CYTIDINE] == * smiles: ** C(C2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))O * inchi key: ** InC...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CYTIDINE CYTIDINE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(C2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))O
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* inchi key:
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** InChIKey=UHDGCWIWMRVCDJ-XVFCMESISA-N
 
* common name:
 
* common name:
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** dihydrolipoamide dehydrogenase
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** cytidine
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** 2-oxoglutarate dehydrogenase, E1 component
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* molecular weight:
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* ec number:
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** 243.219   
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** [http://enzyme.expasy.org/EC/1.2.4.2 EC-1.2.4.2]
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* Synonym(s):
 
* Synonym(s):
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** Oxoglutarate decarboxylase
 
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** 2-oxoglutarate decarboxylation
 
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[CYTIDEAM2-RXN]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-14026]]
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** 1 2-oxoglutarate[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[CHC_T00010287001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00008441001]]
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** ORIGINAL_GENOME
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00008312001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00008441001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00008312001]]
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** ORIGINAL_GENOME
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* UNIPROT:
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* CAS : 65-46-3
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** [http://www.uniprot.org/uniprot/P23129 P23129]
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* METABOLIGHTS : MTBLC17562
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** [http://www.uniprot.org/uniprot/Q02218 Q02218]
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* DRUGBANK : DB02097
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** [http://www.uniprot.org/uniprot/Q60597 Q60597]
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/Q9JRJ8 Q9JRJ8]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6175 6175]
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** [http://www.uniprot.org/uniprot/P20967 P20967]
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* HMDB : HMDB00089
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** [http://www.uniprot.org/uniprot/P0AFG3 P0AFG3]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P20707 P20707]
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** [http://www.genome.jp/dbget-bin/www_bget?C00475 C00475]
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** [http://www.uniprot.org/uniprot/P51056 P51056]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/Q56600 Q56600]
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** [http://www.chemspider.com/Chemical-Structure.5940.html 5940]
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** [http://www.uniprot.org/uniprot/O49541 O49541]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q59106 Q59106]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17562 17562]
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** [http://www.uniprot.org/uniprot/Q9M2T8 Q9M2T8]
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* BIGG : cytd
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** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2]
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{{#set: smiles=C(C2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))O}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: inchi key=InChIKey=UHDGCWIWMRVCDJ-XVFCMESISA-N}}
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{{#set: common name=dihydrolipoamide dehydrogenase}}
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{{#set: common name=cytidine}}
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{{#set: common name=2-oxoglutarate dehydrogenase, E1 component}}
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{{#set: molecular weight=243.219    }}
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{{#set: ec number=EC-1.2.4.2}}
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{{#set: consumed by=CYTIDEAM2-RXN}}
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{{#set: common name=Oxoglutarate decarboxylase|2-oxoglutarate decarboxylation}}
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{{#set: produced by=RXN-14026}}
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{{#set: gene associated=CHC_T00010287001_1|CHC_T00008441001|CHC_T00008312001_1|CHC_T00008441001_1|CHC_T00008312001}}
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{{#set: in pathway=PWY66-398|PWY-5084}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Revision as of 16:15, 23 May 2018

Metabolite CYTIDINE

  • smiles:
    • C(C2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))O
  • inchi key:
    • InChIKey=UHDGCWIWMRVCDJ-XVFCMESISA-N
  • common name:
    • cytidine
  • molecular weight:
    • 243.219
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 65-46-3
  • METABOLIGHTS : MTBLC17562
  • DRUGBANK : DB02097
  • PUBCHEM:
  • HMDB : HMDB00089
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • BIGG : cytd




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