Difference between revisions of "RXN0-7238"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE] == * smiles: **...")
 
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-7238 RXN0-7238] ==
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* smiles:
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* direction:
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** C[S+](CCC(C([O-])=O)=O)CC1(OC(C(C1O)O)N3(C2(=NC=NC(=C2N=C3)N)))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=UOKVQQMBGVMXPU-CJPDYEHRSA-N
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* common name:
 
* common name:
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** S-adenosyl-4-methylthio-2-oxobutanoate
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** long-chain-fatty-acid-CoA ligase
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* molecular weight:
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* ec number:
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** 397.405   
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PROTON]][e] '''+''' 1 [[CPD-9247]][e] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-18346]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
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* [[DAPASYN-RXN]]
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* With common name(s):
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 H+[e] '''+''' 1 cis-vaccenate[e] '''=>''' 1 AMP[c] '''+''' 1 cis-vaccenoyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00009428001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008811001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00009428001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008811001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008160001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00008500001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5459852 5459852]
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{{#set: common name=long-chain-fatty-acid-CoA ligase}}
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* CHEMSPIDER:
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{{#set: ec number=EC-6.2.1.3}}
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** [http://www.chemspider.com/Chemical-Structure.4573603.html 4573603]
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{{#set: gene associated=CHC_T00009428001_1|CHC_T00008811001_1|CHC_T00009428001|CHC_T00008811001|CHC_T00008160001_1|CHC_T00008500001_1}}
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* CHEBI:
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{{#set: in pathway=}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16490 16490]
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{{#set: reconstruction category=orthology|annotation}}
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* BIGG : amob
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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* LIGAND-CPD:
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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** [http://www.genome.jp/dbget-bin/www_bget?C04425 C04425]
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{{#set: smiles=C[S+](CCC(C([O-])=O)=O)CC1(OC(C(C1O)O)N3(C2(=NC=NC(=C2N=C3)N)))}}
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{{#set: inchi key=InChIKey=UOKVQQMBGVMXPU-CJPDYEHRSA-N}}
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{{#set: common name=S-adenosyl-4-methylthio-2-oxobutanoate}}
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{{#set: molecular weight=397.405    }}
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{{#set: consumed or produced by=DAPASYN-RXN}}
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Latest revision as of 16:36, 9 January 2019

Reaction RXN0-7238

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 H+[e] + 1 cis-vaccenate[e] => 1 AMP[c] + 1 cis-vaccenoyl-CoA[c] + 1 diphosphate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN0-7238&oldid=20530"