Difference between revisions of "DIAMINOPIMDECARB-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MET MET] == * smiles: ** CSCCC([N+])C([O-])=O * inchi key: ** InChIKey=FFEARJCKVFRZRR-BYPYZUCNS...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MET MET] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
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* smiles:
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* direction:
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** CSCCC([N+])C([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=FFEARJCKVFRZRR-BYPYZUCNSA-N
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* common name:
 
* common name:
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** L-methionine
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** diaminopimelate decarboxylase
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* molecular weight:
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* ec number:
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** 149.207   
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** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
 
* Synonym(s):
 
* Synonym(s):
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** M
 
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** met
 
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** methionine
 
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** L-met
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN0-6948]]
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* With identifiers:
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* [[S-ADENMETSYN-RXN]]
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** 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[LYS]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[RXN-16165]]
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* With common name(s):
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* [[BIOMASS-RXN]]
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** 1 meso-diaminopimelate[c] '''+''' 1 H+[c] '''=>''' 1 L-lysine[c] '''+''' 1 CO2[c]
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* [[METHIONINE--TRNA-LIGASE-RXN]]
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== Reaction(s) known to produce the compound ==
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== Genes associated with this reaction  ==
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* [[RXN-14950]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-17878]]
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* Gene: [[CHC_T00009352001]]
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* [[RXN-14957]]
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** Source: [[annotation-original_genome]]
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* [[RXN-14959]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-17877]]
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* Gene: [[CHC_T00004243001_1]]
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* [[RXN-17473]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[RXN-17472]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[RXN-17875]]
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* Gene: [[CHC_T00009352001_1]]
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* [[RXN-17874]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[RXN-17873]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[3.4.11.18-RXN]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* [[RXN-17876]]
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== Pathways  ==
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* [[RXN-8340]]
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
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* [[RXN0-949]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[RXN0-1342]]
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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* [[2.8.1.6-RXN]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.]]
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
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== Reaction(s) of unknown directionality ==
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[HOMOCYSMET-RXN]]
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
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* [[2.1.1.3-RXN]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 63-68-3
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* RHEA:
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* METABOLIGHTS : MTBLC57844
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
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* PUBCHEM:
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* UNIPROT:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6992087 6992087]
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** [http://www.uniprot.org/uniprot/P19572 P19572]
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* HMDB : HMDB00696
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** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P44316 P44316]
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** [http://www.genome.jp/dbget-bin/www_bget?C00073 C00073]
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** [http://www.uniprot.org/uniprot/P56129 P56129]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/O67262 O67262]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57844 57844]
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** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
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* BIGG : met__L
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** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
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{{#set: smiles=CSCCC([N+])C([O-])=O}}
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** [http://www.uniprot.org/uniprot/P00861 P00861]
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{{#set: inchi key=InChIKey=FFEARJCKVFRZRR-BYPYZUCNSA-N}}
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** [http://www.uniprot.org/uniprot/O27390 O27390]
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{{#set: common name=L-methionine}}
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** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
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{{#set: molecular weight=149.207    }}
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** [http://www.uniprot.org/uniprot/Q58497 Q58497]
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{{#set: common name=M|met|methionine|L-met}}
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** [http://www.uniprot.org/uniprot/O29458 O29458]
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{{#set: consumed by=RXN0-6948|S-ADENMETSYN-RXN|RXN-16165|BIOMASS-RXN|METHIONINE--TRNA-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/P41023 P41023]
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{{#set: produced by=RXN-14950|RXN-17878|RXN-14957|RXN-14959|RXN-17877|RXN-17473|RXN-17472|RXN-17875|RXN-17874|RXN-17873|3.4.11.18-RXN|RXN-17876|RXN-8340|RXN0-949|RXN0-1342|2.8.1.6-RXN|HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.}}
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** [http://www.uniprot.org/uniprot/P23630 P23630]
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{{#set: consumed or produced by=HOMOCYSMET-RXN|2.1.1.3-RXN}}
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** [http://www.uniprot.org/uniprot/P09890 P09890]
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** [http://www.uniprot.org/uniprot/Q55484 Q55484]
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** [http://www.uniprot.org/uniprot/O05321 O05321]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=diaminopimelate decarboxylase}}
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{{#set: ec number=EC-4.1.1.20}}
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{{#set: gene associated=CHC_T00009352001|CHC_T00004243001_1|CHC_T00009352001_1}}
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{{#set: in pathway=PWY-2942|DAPLYSINESYN-PWY|PWY-2941|PWY-5097}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:50, 9 January 2019

Reaction DIAMINOPIMDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • diaminopimelate decarboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2942, L-lysine biosynthesis III: PWY-2942
    • 5 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II: PWY-2941
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5097, L-lysine biosynthesis VI: PWY-5097
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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