Difference between revisions of "3.1.3.16-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.3-RXN 5.99.1.3-RXN] == * direction: ** REVERSIBLE * common name: ** Type II DNA topoisomeras...")
 
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.3-RXN 5.99.1.3-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.3.16-RXN 3.1.3.16-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** Type II DNA topoisomerase VI subunit B
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.99.1.3 EC-5.99.1.3]
+
** [http://enzyme.expasy.org/EC/3.1.3.16 EC-3.1.3.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Double-Stranded-DNAs]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[Pi]][c] '''+''' 1 [[Negatively-super-coiled-DNAs]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[Protein-Ser-or-Thr-phosphate]][c] '''=>''' 1 [[Protein-L-serine-or-L-threonine]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a double stranded DNA[c] '''+''' 1 ATP[c] '''<=>''' 1 phosphate[c] '''+''' 1 a negatively supercoiled DNA[c] '''+''' 1 ADP[c]
+
** 1 H2O[c] '''+''' 1 a [protein] (L-serine/L-threonine) phosphate[c] '''=>''' 1 a [protein]-(L-serine/L-threonine)[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00006305001_1]]
+
* Gene: [[CHC_T00007644001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008288001]]
+
* Gene: [[CHC_T00004176001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[CHC_T00007021001_1]]
−
* [[CHC_T00002053001_1]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00008630001_1]]
−
* [[CHC_T00007354001_1]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00008956001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00004777001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008536001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009030001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00006530001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00004449001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008508001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009328001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00004298001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00006835001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00000279001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00006477001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00002485001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M3G2 Q7M3G2]
+
** [http://www.uniprot.org/uniprot/P67776 P67776]
−
** [http://www.uniprot.org/uniprot/Q02880 Q02880]
+
** [http://www.uniprot.org/uniprot/P67774 P67774]
−
** [http://www.uniprot.org/uniprot/P0A0K8 P0A0K8]
+
** [http://www.uniprot.org/uniprot/P63328 P63328]
−
** [http://www.uniprot.org/uniprot/P41515 P41515]
+
** [http://www.uniprot.org/uniprot/P20650 P20650]
−
** [http://www.uniprot.org/uniprot/P12531 P12531]
+
** [http://www.uniprot.org/uniprot/P20654 P20654]
−
** [http://www.uniprot.org/uniprot/P27570 P27570]
+
** [http://www.uniprot.org/uniprot/P13681 P13681]
−
** [http://www.uniprot.org/uniprot/Q03470 Q03470]
+
** [http://www.uniprot.org/uniprot/P63329 P63329]
−
** [http://www.uniprot.org/uniprot/P35810 P35810]
+
** [http://www.uniprot.org/uniprot/P20651 P20651]
−
** [http://www.uniprot.org/uniprot/P43701 P43701]
+
** [http://www.uniprot.org/uniprot/Q7M2R6 Q7M2R6]
−
** [http://www.uniprot.org/uniprot/Q9JX55 Q9JX55]
+
** [http://www.uniprot.org/uniprot/P23635 P23635]
−
** [http://www.uniprot.org/uniprot/Q9CH36 Q9CH36]
+
** [http://www.uniprot.org/uniprot/P16298 P16298]
−
** [http://www.uniprot.org/uniprot/P20831 P20831]
+
** [http://www.uniprot.org/uniprot/Q04071 Q04071]
−
** [http://www.uniprot.org/uniprot/Q9JTW5 Q9JTW5]
+
** [http://www.uniprot.org/uniprot/P48455 P48455]
−
** [http://www.uniprot.org/uniprot/P33769 P33769]
+
** [http://www.uniprot.org/uniprot/Q7M2L6 Q7M2L6]
−
** [http://www.uniprot.org/uniprot/P47250 P47250]
+
** [http://www.uniprot.org/uniprot/Q00756 Q00756]
−
** [http://www.uniprot.org/uniprot/Q59189 Q59189]
+
** [http://www.uniprot.org/uniprot/Q05681 Q05681]
−
** [http://www.uniprot.org/uniprot/P05652 P05652]
+
** [http://www.uniprot.org/uniprot/P36876 P36876]
−
** [http://www.uniprot.org/uniprot/P43700 P43700]
+
** [http://www.uniprot.org/uniprot/P40421 P40421]
−
** [http://www.uniprot.org/uniprot/P05653 P05653]
+
** [http://www.uniprot.org/uniprot/Q27787 Q27787]
−
** [http://www.uniprot.org/uniprot/O87667 O87667]
+
** [http://www.uniprot.org/uniprot/P36872 P36872]
−
** [http://www.uniprot.org/uniprot/Q9CGI5 Q9CGI5]
+
** [http://www.uniprot.org/uniprot/Q07161 Q07161]
−
** [http://www.uniprot.org/uniprot/P23992 P23992]
+
** [http://www.uniprot.org/uniprot/Q06190 Q06190]
−
** [http://www.uniprot.org/uniprot/P09176 P09176]
+
** [http://www.uniprot.org/uniprot/P36982 P36982]
−
** [http://www.uniprot.org/uniprot/P06786 P06786]
+
** [http://www.uniprot.org/uniprot/P49444 P49444]
−
** [http://www.uniprot.org/uniprot/P0AES6 P0AES6]
+
** [http://www.uniprot.org/uniprot/P50410 P50410]
−
** [http://www.uniprot.org/uniprot/Q00942 Q00942]
+
** [http://www.uniprot.org/uniprot/P40371 P40371]
−
** [http://www.uniprot.org/uniprot/P22447 P22447]
+
** [http://www.uniprot.org/uniprot/P48452 P48452]
−
** [http://www.uniprot.org/uniprot/P08096 P08096]
+
** [http://www.uniprot.org/uniprot/P23880 P23880]
−
** [http://www.uniprot.org/uniprot/P07065 P07065]
+
** [http://www.uniprot.org/uniprot/P23636 P23636]
−
** [http://www.uniprot.org/uniprot/P0AES4 P0AES4]
+
** [http://www.uniprot.org/uniprot/P48456 P48456]
−
** [http://www.uniprot.org/uniprot/P14829 P14829]
+
** [http://www.uniprot.org/uniprot/Q27786 Q27786]
−
** [http://www.uniprot.org/uniprot/P77993 P77993]
+
** [http://www.uniprot.org/uniprot/P63087 P63087]
−
** [http://www.uniprot.org/uniprot/P22840 P22840]
+
** [http://www.uniprot.org/uniprot/Q04104 Q04104]
−
** [http://www.uniprot.org/uniprot/Q01320 Q01320]
+
** [http://www.uniprot.org/uniprot/P62141 P62141]
−
** [http://www.uniprot.org/uniprot/P15348 P15348]
+
** [http://www.uniprot.org/uniprot/P54613 P54613]
−
** [http://www.uniprot.org/uniprot/P13364 P13364]
+
** [http://www.uniprot.org/uniprot/Q04101 Q04101]
−
** [http://www.uniprot.org/uniprot/P34203 P34203]
+
** [http://www.uniprot.org/uniprot/O28453 O28453]
−
** [http://www.uniprot.org/uniprot/P50074 P50074]
+
** [http://www.uniprot.org/uniprot/Q04102 Q04102]
−
** [http://www.uniprot.org/uniprot/P34031 P34031]
+
** [http://www.uniprot.org/uniprot/Q04103 Q04103]
−
** [http://www.uniprot.org/uniprot/Q50404 Q50404]
+
** [http://www.uniprot.org/uniprot/Q16821 Q16821]
−
** [http://www.uniprot.org/uniprot/Q50405 Q50405]
+
** [http://www.uniprot.org/uniprot/P36993 P36993]
−
** [http://www.uniprot.org/uniprot/Q50406 Q50406]
+
** [http://www.uniprot.org/uniprot/Q16474 Q16474]
−
** [http://www.uniprot.org/uniprot/P41513 P41513]
+
** [http://www.uniprot.org/uniprot/P62142 P62142]
−
** [http://www.uniprot.org/uniprot/Q43906 Q43906]
+
** [http://www.uniprot.org/uniprot/P63088 P63088]
−
** [http://www.uniprot.org/uniprot/P30182 P30182]
+
** [http://www.uniprot.org/uniprot/P48454 P48454]
−
** [http://www.uniprot.org/uniprot/P37411 P37411]
+
** [http://www.uniprot.org/uniprot/P35815 P35815]
−
** [http://www.uniprot.org/uniprot/P0A0L0 P0A0L0]
+
** [http://www.uniprot.org/uniprot/Q92140 Q92140]
−
** [http://www.uniprot.org/uniprot/Q50435 Q50435]
+
** [http://www.uniprot.org/uniprot/P87345 P87345]
−
** [http://www.uniprot.org/uniprot/P22446 P22446]
+
** [http://www.uniprot.org/uniprot/Q9P982 Q9P982]
−
** [http://www.uniprot.org/uniprot/P77966 P77966]
+
** [http://www.uniprot.org/uniprot/P48453 P48453]
−
** [http://www.uniprot.org/uniprot/Q48974 Q48974]
+
** [http://www.uniprot.org/uniprot/P62138 P62138]
−
** [http://www.uniprot.org/uniprot/Q48995 Q48995]
+
** [http://www.uniprot.org/uniprot/P20604 P20604]
−
** [http://www.uniprot.org/uniprot/Q49017 Q49017]
+
** [http://www.uniprot.org/uniprot/P26570 P26570]
−
** [http://www.uniprot.org/uniprot/O68071 O68071]
+
** [http://www.uniprot.org/uniprot/P23594 P23594]
−
** [http://www.uniprot.org/uniprot/O68140 O68140]
+
** [http://www.uniprot.org/uniprot/P23595 P23595]
−
** [http://www.uniprot.org/uniprot/O24308 O24308]
+
** [http://www.uniprot.org/uniprot/P32345 P32345]
−
** [http://www.uniprot.org/uniprot/Q57532 Q57532]
+
** [http://www.uniprot.org/uniprot/P12982 P12982]
−
** [http://www.uniprot.org/uniprot/O41065 O41065]
+
** [http://www.uniprot.org/uniprot/P11612 P11612]
−
** [http://www.uniprot.org/uniprot/Q9ZNN5 Q9ZNN5]
+
** [http://www.uniprot.org/uniprot/P67777 P67777]
−
** [http://www.uniprot.org/uniprot/Q9ZNN4 Q9ZNN4]
+
** [http://www.uniprot.org/uniprot/P67775 P67775]
−
** [http://www.uniprot.org/uniprot/Q9ZNN3 Q9ZNN3]
+
** [http://www.uniprot.org/uniprot/P62714 P62714]
−
** [http://www.uniprot.org/uniprot/Q9ZNN2 Q9ZNN2]
+
** [http://www.uniprot.org/uniprot/P62139 P62139]
−
** [http://www.uniprot.org/uniprot/Q9ZNN1 Q9ZNN1]
+
** [http://www.uniprot.org/uniprot/P11611 P11611]
−
** [http://www.uniprot.org/uniprot/Q9ZNN0 Q9ZNN0]
+
** [http://www.uniprot.org/uniprot/P11084 P11084]
−
** [http://www.uniprot.org/uniprot/O87117 O87117]
+
** [http://www.uniprot.org/uniprot/P63331 P63331]
−
** [http://www.uniprot.org/uniprot/Q9WXF4 Q9WXF4]
+
** [http://www.uniprot.org/uniprot/P62716 P62716]
−
** [http://www.uniprot.org/uniprot/O50627 O50627]
+
** [http://www.uniprot.org/uniprot/P23734 P23734]
−
** [http://www.uniprot.org/uniprot/O50628 O50628]
+
** [http://www.uniprot.org/uniprot/P23696 P23696]
−
** [http://www.uniprot.org/uniprot/P94604 P94604]
+
** [http://www.uniprot.org/uniprot/P23777 P23777]
−
** [http://www.uniprot.org/uniprot/P94605 P94605]
+
** [http://www.uniprot.org/uniprot/P48461 P48461]
−
** [http://www.uniprot.org/uniprot/Q9S5H9 Q9S5H9]
+
** [http://www.uniprot.org/uniprot/P48462 P48462]
−
** [http://www.uniprot.org/uniprot/Q9ZNH3 Q9ZNH3]
+
** [http://www.uniprot.org/uniprot/P62143 P62143]
−
** [http://www.uniprot.org/uniprot/Q9ZNH2 Q9ZNH2]
+
** [http://www.uniprot.org/uniprot/P23287 P23287]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/Q8AVH9 Q8AVH9]
−
{{#set: common name=Type II DNA topoisomerase VI subunit B}}
+
** [http://www.uniprot.org/uniprot/P35814 P35814]
−
{{#set: ec number=EC-5.99.1.3}}
+
** [http://www.uniprot.org/uniprot/P35813 P35813]
−
{{#set: gene associated=CHC_T00006305001_1|CHC_T00008288001|CHC_T00002053001_1|CHC_T00007354001_1}}
+
** [http://www.uniprot.org/uniprot/P48482 P48482]
 +
** [http://www.uniprot.org/uniprot/P48485 P48485]
 +
** [http://www.uniprot.org/uniprot/P48487 P48487]
 +
** [http://www.uniprot.org/uniprot/Q9PSQ6 Q9PSQ6]
 +
** [http://www.uniprot.org/uniprot/Q95097 Q95097]
 +
** [http://www.uniprot.org/uniprot/P22198 P22198]
 +
** [http://www.uniprot.org/uniprot/Q05547 Q05547]
 +
** [http://www.uniprot.org/uniprot/P48483 P48483]
 +
** [http://www.uniprot.org/uniprot/P48484 P48484]
 +
** [http://www.uniprot.org/uniprot/Q07099 Q07099]
 +
** [http://www.uniprot.org/uniprot/Q07098 Q07098]
 +
** [http://www.uniprot.org/uniprot/Q07100 Q07100]
 +
** [http://www.uniprot.org/uniprot/P32598 P32598]
 +
** [http://www.uniprot.org/uniprot/P36877 P36877]
 +
** [http://www.uniprot.org/uniprot/Q08209 Q08209]
 +
** [http://www.uniprot.org/uniprot/Q06009 Q06009]
 +
** [http://www.uniprot.org/uniprot/P33329 P33329]
 +
** [http://www.uniprot.org/uniprot/P36873 P36873]
 +
** [http://www.uniprot.org/uniprot/P31383 P31383]
 +
** [http://www.uniprot.org/uniprot/P48579 P48579]
 +
** [http://www.uniprot.org/uniprot/P32945 P32945]
 +
** [http://www.uniprot.org/uniprot/Q27884 Q27884]
 +
** [http://www.uniprot.org/uniprot/P34221 P34221]
 +
** [http://www.uniprot.org/uniprot/Q7M3E4 Q7M3E4]
 +
** [http://www.uniprot.org/uniprot/P62140 P62140]
 +
** [http://www.uniprot.org/uniprot/Q27889 Q27889]
 +
** [http://www.uniprot.org/uniprot/P35182 P35182]
 +
** [http://www.uniprot.org/uniprot/P48529 P48529]
 +
** [http://www.uniprot.org/uniprot/P48528 P48528]
 +
** [http://www.uniprot.org/uniprot/Q21513 Q21513]
 +
** [http://www.uniprot.org/uniprot/P48488 P48488]
 +
** [http://www.uniprot.org/uniprot/P48457 P48457]
 +
** [http://www.uniprot.org/uniprot/P38089 P38089]
 +
** [http://www.uniprot.org/uniprot/P14747 P14747]
 +
** [http://www.uniprot.org/uniprot/P48490 P48490]
 +
** [http://www.uniprot.org/uniprot/P53041 P53041]
 +
** [http://www.uniprot.org/uniprot/P53043 P53043]
 +
** [http://www.uniprot.org/uniprot/P48578 P48578]
 +
** [http://www.uniprot.org/uniprot/P49598 P49598]
 +
** [http://www.uniprot.org/uniprot/P48580 P48580]
 +
** [http://www.uniprot.org/uniprot/P32838 P32838]
 +
** [http://www.uniprot.org/uniprot/Q63759 Q63759]
 +
** [http://www.uniprot.org/uniprot/Q14738 Q14738]
 +
** [http://www.uniprot.org/uniprot/Q27560 Q27560]
 +
** [http://www.uniprot.org/uniprot/Q38845 Q38845]
 +
** [http://www.uniprot.org/uniprot/Q8L7U5 Q8L7U5]
 +
** [http://www.uniprot.org/uniprot/P48489 P48489]
 +
** [http://www.uniprot.org/uniprot/Q42981 Q42981]
 +
** [http://www.uniprot.org/uniprot/O04856 O04856]
 +
** [http://www.uniprot.org/uniprot/O04857 O04857]
 +
** [http://www.uniprot.org/uniprot/O04858 O04858]
 +
** [http://www.uniprot.org/uniprot/O04859 O04859]
 +
** [http://www.uniprot.org/uniprot/O04860 O04860]
 +
** [http://www.uniprot.org/uniprot/Q40556 Q40556]
 +
** [http://www.uniprot.org/uniprot/P49597 P49597]
 +
** [http://www.uniprot.org/uniprot/O65844 O65844]
 +
** [http://www.uniprot.org/uniprot/O65845 O65845]
 +
** [http://www.uniprot.org/uniprot/O65846 O65846]
 +
** [http://www.uniprot.org/uniprot/O65847 O65847]
 +
** [http://www.uniprot.org/uniprot/O81955 O81955]
 +
** [http://www.uniprot.org/uniprot/O81956 O81956]
 +
** [http://www.uniprot.org/uniprot/Q50188 Q50188]
 +
** [http://www.uniprot.org/uniprot/P48486 P48486]
 +
** [http://www.uniprot.org/uniprot/Q42912 Q42912]
 +
** [http://www.uniprot.org/uniprot/O18148 O18148]
 +
** [http://www.uniprot.org/uniprot/O14189 O14189]
 +
** [http://www.uniprot.org/uniprot/Q10298 Q10298]
 +
** [http://www.uniprot.org/uniprot/O01921 O01921]
 +
** [http://www.uniprot.org/uniprot/Q94374 Q94374]
 +
** [http://www.uniprot.org/uniprot/Q94372 Q94372]
 +
** [http://www.uniprot.org/uniprot/Q94371 Q94371]
 +
** [http://www.uniprot.org/uniprot/Q94370 Q94370]
 +
** [http://www.uniprot.org/uniprot/Q12705 Q12705]
 +
** [http://www.uniprot.org/uniprot/O49346 O49346]
 +
** [http://www.uniprot.org/uniprot/O82469 O82469]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-3.1.3.16}}
 +
{{#set: gene associated=CHC_T00007644001_1|CHC_T00004176001_1|CHC_T00007021001_1|CHC_T00008630001_1|CHC_T00008956001_1|CHC_T00004777001_1|CHC_T00008536001_1|CHC_T00009030001_1|CHC_T00006530001_1|CHC_T00004449001_1|CHC_T00008508001_1|CHC_T00009328001_1|CHC_T00004298001_1|CHC_T00006835001_1|CHC_T00000279001_1|CHC_T00006477001_1|CHC_T00002485001_1}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Latest revision as of 17:58, 9 January 2019

Reaction 3.1.3.16-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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