Difference between revisions of "RXN0-5055"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] == * direction: ** REVERSIBLE * common name: ** glycine dehydrogenase (decarboxy...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5055 RXN0-5055] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glycine dehydrogenase (decarboxylating), mitochondrial precursor
+
** acetyl-CoA carboxylase carboxytransferase beta subunit
 +
** acetyl-CoA carboxylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2]
+
** [http://enzyme.expasy.org/EC/6.4.1.2 EC-6.4.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[ACETYL-COA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[Carboxybiotin-BCCP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[BCCP-dimers]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 glycine[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 H+[c] '''<=>''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c]
+
** 1 acetyl-CoA[c] '''+''' 1 ATP[c] '''+''' 1 a carboxylated-biotinylated [BCCP dimer][c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 a biotinylated [BCCP dimer][c] '''+''' 1 malonyl-CoA[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00007428001_1]]
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* Gene: [[CHC_T00009359001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00007347001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_55]]
−
* [[CHC_T00007762001_1]]
+
** Source: [[annotation-original_genome]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[CHC_T00007880001_1]]
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* Gene: [[CHC_T00007145001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00009122001]]
+
* Gene: [[CHC_T00009359001]]
−
** ORIGINAL_GENOME
+
** Source: [[annotation-original_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[CHC_T00005686001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-SYN2-PWY GLYCINE-SYN2-PWY]
+
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1264 PWY0-1264]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
+
{{#set: common name=acetyl-CoA carboxylase carboxytransferase beta subunit}}
−
* UNIPROT:
+
{{#set: common name=acetyl-CoA carboxylase}}
−
** [http://www.uniprot.org/uniprot/P26969 P26969]
+
{{#set: ec number=EC-6.4.1.2}}
−
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
+
{{#set: gene associated=CHC_T00009359001_1|CHC_55|CHC_T00007145001_1|CHC_T00009359001}}
−
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
+
{{#set: in pathway=PWY0-1264}}
−
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P23378 P23378]
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
−
** [http://www.uniprot.org/uniprot/P33195 P33195]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/O80988 O80988]
+
−
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
+
−
** [http://www.uniprot.org/uniprot/O32915 O32915]
+
−
** [http://www.uniprot.org/uniprot/O22575 O22575]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=glycine dehydrogenase (decarboxylating), mitochondrial precursor}}
+
−
{{#set: ec number=EC-1.4.4.2}}
+
−
{{#set: gene associated=CHC_T00007428001_1|CHC_T00007347001_1|CHC_T00007762001_1|CHC_T00007880001_1|CHC_T00009122001|CHC_T00005686001_1}}
+
−
{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Latest revision as of 16:33, 9 January 2019

Reaction RXN0-5055

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acetyl-CoA carboxylase carboxytransferase beta subunit
    • acetyl-CoA carboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 acetyl-CoA[c] + 1 ATP[c] + 1 a carboxylated-biotinylated [BCCP dimer][c] + 1 H2O[c] => 1 H+[c] + 1 phosphate[c] + 1 a biotinylated [BCCP dimer][c] + 1 malonyl-CoA[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1264, biotin-carboxyl carrier protein assembly: PWY0-1264
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN0-5055&oldid=21925"