Difference between revisions of "PWY-2541"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541] ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** plant sterol biosynthesis
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/6.5.1.7 EC-6.5.1.7]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
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** [http://enzyme.expasy.org/EC/6.5.1.1 EC-6.5.1.1]
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** [http://enzyme.expasy.org/EC/6.5.1.6 EC-6.5.1.6]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''12''' reactions found over '''36''' reactions in the full pathway
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** 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''=>''' 1 [[DNA-N]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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* [[1.14.13.70-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 a [DNA]-3'-hydroxyl[c] '''+''' 1 ATP[c] '''+''' 1 a 5'-phospho-[DNA][c] '''=>''' 1 DNAn[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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*** [[CHC_T00009303001_1]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-galdieria.sulphuraria]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-ectocarpus_siliculosus]]
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* [[CHC_T00002554001_1]]
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* [[CYCLOARTENOL-SYNTHASE-RXN]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 2 associated gene(s):
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* [[CHC_T00010250001_1]]
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*** [[CHC_T00008265001]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00008265001_1]]
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== Pathways  ==
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** 4 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[orthology-galdieria.sulphuraria]]
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* [[orthology]]:
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*** [[annotation-original_genome]]
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** [[pantograph]]:
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*** [[orthology-arabidopsis_thaliana]]
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*** [[galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[CYCLOEUCALENOL-CYCLOISOMERASE-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00002985001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PWY-5670]]
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** 0 associated gene:
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* [[RXN-4144]]
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** 1 associated gene(s):
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*** [[CHC_T00003466001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-4209]]
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** 1 associated gene(s):
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*** [[CHC_T00006481001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-4210]]
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** 1 associated gene(s):
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*** [[CHC_T00006493001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-4222]]
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** 1 associated gene(s):
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*** [[CHC_T00002789001]]
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** 1 reconstruction source(s) associated:
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*** [[manual-reactions_to_add_2]]
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* [[RXN-4243]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reactions_to_add_2]]
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* [[RXN-707]]
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** 1 associated gene(s):
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*** [[CHC_T00006493001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-708]]
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** 1 associated gene(s):
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*** [[CHC_T00002789001]]
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** 1 reconstruction source(s) associated:
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*** [[manual-reactions_to_add_2]]
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* [[RXN3O-218]]
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** 1 associated gene(s):
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*** [[CHC_T00006481001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.143-RXN 2.1.1.143-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11925 RXN-11925]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11926 RXN-11926]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11927 RXN-11927]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11928 RXN-11928]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11929 RXN-11929]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11930 RXN-11930]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11931 RXN-11931]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11932 RXN-11932]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11933 RXN-11933]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11934 RXN-11934]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11935 RXN-11935]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11936 RXN-11936]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11937 RXN-11937]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11938 RXN-11938]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11939 RXN-11939]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4021 RXN-4021]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4161 RXN-4161]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4221 RXN-4221]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4224 RXN-4224]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4242 RXN-4242]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8352 RXN-8352]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8353 RXN-8353]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* PLANTCYC : PWY-2541
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** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
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* ARACYC:
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* UNIPROT:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-2541 PWY-2541]
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** [http://www.uniprot.org/uniprot/P12000 P12000]
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{{#set: common name=plant sterol biosynthesis}}
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** [http://www.uniprot.org/uniprot/P18858 P18858]
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{{#set: taxonomic range=TAX-3398}}
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** [http://www.uniprot.org/uniprot/P35970 P35970]
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{{#set: reaction found=12}}
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** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
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{{#set: total reaction=36}}
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** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
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{{#set: completion rate=33.0}}
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** [http://www.uniprot.org/uniprot/Q57635 Q57635]
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** [http://www.uniprot.org/uniprot/P49917 P49917]
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** [http://www.uniprot.org/uniprot/P49916 P49916]
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** [http://www.uniprot.org/uniprot/P37913 P37913]
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** [http://www.uniprot.org/uniprot/P51892 P51892]
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** [http://www.uniprot.org/uniprot/P16272 P16272]
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** [http://www.uniprot.org/uniprot/P33798 P33798]
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** [http://www.uniprot.org/uniprot/P00970 P00970]
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** [http://www.uniprot.org/uniprot/P00969 P00969]
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** [http://www.uniprot.org/uniprot/P04819 P04819]
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** [http://www.uniprot.org/uniprot/P19088 P19088]
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** [http://www.uniprot.org/uniprot/P07717 P07717]
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** [http://www.uniprot.org/uniprot/P26813 P26813]
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** [http://www.uniprot.org/uniprot/Q02093 Q02093]
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** [http://www.uniprot.org/uniprot/Q23694 Q23694]
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** [http://www.uniprot.org/uniprot/Q67480 Q67480]
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** [http://www.uniprot.org/uniprot/Q42572 Q42572]
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** [http://www.uniprot.org/uniprot/P20492 P20492]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-6.5.1.7}}
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{{#set: ec number=EC-6.5.1.1}}
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{{#set: ec number=EC-6.5.1.6}}
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{{#set: gene associated=CHC_T00002554001_1|CHC_T00010250001_1}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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Latest revision as of 15:01, 9 January 2019

Pathway PWY-2541

  • common name:
    • plant sterol biosynthesis
  • taxonomic range:
  • Synonym(s):

Reaction(s) found

12 reactions found over 36 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-2541&oldid=19699"