Difference between revisions of "PWY-6917"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] == * direction: ** REVERSIBLE * common name: ** transketolase * ec n...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6917 PWY-6917] ==
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* direction:
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** REVERSIBLE
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* common name:
 
* common name:
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** transketolase
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** vernolate biosynthesis III
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* Synonym(s):
 
* Synonym(s):
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** oat seed peroxygenase pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''3''' reactions in the full pathway
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** 1 [[XYLULOSE-5-PHOSPHATE]][c] '''+''' 1 [[ERYTHROSE-4P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
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* [[LINOLEOYL-RXN]]
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* With common name(s):
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** 0 associated gene:
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** 1 D-xylulose 5-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
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** 1 reconstruction source(s) associated:
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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== Genes associated with this reaction  ==
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* [[RXN-8497]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* [[CHC_T00005040001_1]]
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*** [[CHC_T00008739001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[a.taliana]]
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*** [[orthology-arabidopsis_thaliana]]
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** [[pantograph]]-[[a.taliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[CHC_T00009390001_1]]
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== Reaction(s) not found ==
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16219 RXN-16219]
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** [[pantograph]]-[[a.taliana]]
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** [[pantograph]]-[[a.taliana]]
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== Pathways  ==
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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*** [[a.taliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common name=vernolate biosynthesis III}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
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{{#set: taxonomic range=TAX-33090}}
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* LIGAND-RXN:
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{{#set: common name=oat seed peroxygenase pathway}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
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{{#set: reaction found=2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067]
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{{#set: total reaction=3}}
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* UNIPROT:
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/P22976 P22976]
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** [http://www.uniprot.org/uniprot/P29401 P29401]
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** [http://www.uniprot.org/uniprot/P33570 P33570]
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** [http://www.uniprot.org/uniprot/P21725 P21725]
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** [http://www.uniprot.org/uniprot/Q58094 Q58094]
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** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
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** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
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** [http://www.uniprot.org/uniprot/P21726 P21726]
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** [http://www.uniprot.org/uniprot/P47312 P47312]
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** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
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** [http://www.uniprot.org/uniprot/P43757 P43757]
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** [http://www.uniprot.org/uniprot/Q58092 Q58092]
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** [http://www.uniprot.org/uniprot/P45694 P45694]
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** [http://www.uniprot.org/uniprot/Q52723 Q52723]
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** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
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** [http://www.uniprot.org/uniprot/P34736 P34736]
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** [http://www.uniprot.org/uniprot/P33315 P33315]
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** [http://www.uniprot.org/uniprot/Q42675 Q42675]
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** [http://www.uniprot.org/uniprot/Q42676 Q42676]
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** [http://www.uniprot.org/uniprot/Q42677 Q42677]
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** [http://www.uniprot.org/uniprot/P46708 P46708]
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** [http://www.uniprot.org/uniprot/P75611 P75611]
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** [http://www.uniprot.org/uniprot/P73282 P73282]
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** [http://www.uniprot.org/uniprot/Q49047 Q49047]
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** [http://www.uniprot.org/uniprot/O20250 O20250]
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** [http://www.uniprot.org/uniprot/O78327 O78327]
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** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
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** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
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** [http://www.uniprot.org/uniprot/P23254 P23254]
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** [http://www.uniprot.org/uniprot/P27302 P27302]
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** [http://www.uniprot.org/uniprot/P29277 P29277]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=transketolase}}
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{{#set: ec number=EC-2.2.1.1}}
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{{#set: gene associated=CHC_T00005040001_1|CHC_T00009390001_1}}
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{{#set: in pathway=PWY-6901|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 15:39, 9 January 2019

Pathway PWY-6917

  • common name:
    • vernolate biosynthesis III
  • taxonomic range:
  • Synonym(s):
    • oat seed peroxygenase pathway

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-6917&oldid=20622"