Difference between revisions of "DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** aspartate amin...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] == * direction: ** LEFT-...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** aspartate aminotransferase
+
** deoxyribodipyrimidine photolyase
−
** Aspartate aminotransferase
+
−
** Aspartate transaminase
+
−
** probable aspartate aminotransferase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
+
** [http://enzyme.expasy.org/EC/4.1.99.3 EC-4.1.99.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
+
** 1 [[DNA-With-Pyrimidine-Dimers]][c] '''=>''' 1 [[DNA-Adjacent-Pyrimidines]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 oxaloacetate[c]
+
**
−
 
+
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00006498001_1]]
+
* Gene: [[CHC_T00007328001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00010197001]]
+
* Gene: [[CHC_T00010174001]]
−
** ORIGINAL_GENOME
+
** Source: [[annotation-original_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[CHC_T00009477001]]
+
* Gene: [[CHC_T00001477001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-galdieria.sulphuraria]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00005085001_1]]
+
* Gene: [[CHC_T00010314001_1]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[a.taliana]]
+
−
* [[CHC_T00008432001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00010017001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00003344001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00009477001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
** [[pantograph]]-[[a.taliana]]
+
−
** [[pantograph]]-[[a.taliana]]
+
−
** [[pantograph]]-[[a.taliana]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 
−
** '''7''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
* Category: [[annotation]]
−
*** [[original_genome]]
+
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21824 21824]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00034 R00034]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7LZ21 Q7LZ21]
+
** [http://www.uniprot.org/uniprot/P12769 P12769]
−
** [http://www.uniprot.org/uniprot/P08906 P08906]
+
** [http://www.uniprot.org/uniprot/Q9JSP8 Q9JSP8]
−
** [http://www.uniprot.org/uniprot/P12343 P12343]
+
** [http://www.uniprot.org/uniprot/Q9HQ46 Q9HQ46]
−
** [http://www.uniprot.org/uniprot/Q06191 Q06191]
+
** [http://www.uniprot.org/uniprot/P12768 P12768]
−
** [http://www.uniprot.org/uniprot/Q02635 Q02635]
+
** [http://www.uniprot.org/uniprot/P27526 P27526]
−
** [http://www.uniprot.org/uniprot/Q60317 Q60317]
+
** [http://www.uniprot.org/uniprot/P25078 P25078]
−
** [http://www.uniprot.org/uniprot/O28151 O28151]
+
** [http://www.uniprot.org/uniprot/Q43125 Q43125]
−
** [http://www.uniprot.org/uniprot/O67781 O67781]
+
** [http://www.uniprot.org/uniprot/P40115 P40115]
−
** [http://www.uniprot.org/uniprot/P08907 P08907]
+
** [http://www.uniprot.org/uniprot/Q28811 Q28811]
−
** [http://www.uniprot.org/uniprot/P12345 P12345]
+
** [http://www.uniprot.org/uniprot/Q24443 Q24443]
−
** [http://www.uniprot.org/uniprot/Q9X0Y2 Q9X0Y2]
+
** [http://www.uniprot.org/uniprot/Q91186 Q91186]
−
** [http://www.uniprot.org/uniprot/Q9PPF7 Q9PPF7]
+
** [http://www.uniprot.org/uniprot/Q42696 Q42696]
−
** [http://www.uniprot.org/uniprot/Q9JVS3 Q9JVS3]
+
** [http://www.uniprot.org/uniprot/P05066 P05066]
−
** [http://www.uniprot.org/uniprot/P53001 P53001]
+
** [http://www.uniprot.org/uniprot/O24020 O24020]
−
** [http://www.uniprot.org/uniprot/P96847 P96847]
+
** [http://www.uniprot.org/uniprot/O24374 O24374]
−
** [http://www.uniprot.org/uniprot/Q9K0P5 Q9K0P5]
+
** [http://www.uniprot.org/uniprot/P00914 P00914]
−
** [http://www.uniprot.org/uniprot/Q9X224 Q9X224]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/Q9Y9P0 Q9Y9P0]
+
{{#set: common name=deoxyribodipyrimidine photolyase}}
−
** [http://www.uniprot.org/uniprot/Q9RWP3 Q9RWP3]
+
{{#set: ec number=EC-4.1.99.3}}
−
** [http://www.uniprot.org/uniprot/O66737 O66737]
+
{{#set: gene associated=CHC_T00007328001_1|CHC_T00010174001|CHC_T00001477001_1|CHC_T00010314001_1}}
−
** [http://www.uniprot.org/uniprot/O28650 O28650]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/O30304 O30304]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q9CEK7 Q9CEK7]
+
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
−
** [http://www.uniprot.org/uniprot/O27916 O27916]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/O05237 O05237]
+
−
** [http://www.uniprot.org/uniprot/Q9YE99 Q9YE99]
+
−
** [http://www.uniprot.org/uniprot/O25383 O25383]
+
−
** [http://www.uniprot.org/uniprot/O27638 O27638]
+
−
** [http://www.uniprot.org/uniprot/O96142 O96142]
+
−
** [http://www.uniprot.org/uniprot/Q9ZLG5 Q9ZLG5]
+
−
** [http://www.uniprot.org/uniprot/P00507 P00507]
+
−
** [http://www.uniprot.org/uniprot/P44425 P44425]
+
−
** [http://www.uniprot.org/uniprot/Q59569 Q59569]
+
−
** [http://www.uniprot.org/uniprot/Q59197 Q59197]
+
−
** [http://www.uniprot.org/uniprot/P37833 P37833]
+
−
** [http://www.uniprot.org/uniprot/O48599 O48599]
+
−
** [http://www.uniprot.org/uniprot/O33822 O33822]
+
−
** [http://www.uniprot.org/uniprot/P05201 P05201]
+
−
** [http://www.uniprot.org/uniprot/P05202 P05202]
+
−
** [http://www.uniprot.org/uniprot/P14909 P14909]
+
−
** [http://www.uniprot.org/uniprot/P17174 P17174]
+
−
** [http://www.uniprot.org/uniprot/P33097 P33097]
+
−
** [http://www.uniprot.org/uniprot/Q43057 Q43057]
+
−
** [http://www.uniprot.org/uniprot/Q43305 Q43305]
+
−
** [http://www.uniprot.org/uniprot/Q42794 Q42794]
+
−
** [http://www.uniprot.org/uniprot/P12344 P12344]
+
−
** [http://www.uniprot.org/uniprot/Q01802 Q01802]
+
−
** [http://www.uniprot.org/uniprot/Q40325 Q40325]
+
−
** [http://www.uniprot.org/uniprot/P36692 P36692]
+
−
** [http://www.uniprot.org/uniprot/P28011 P28011]
+
−
** [http://www.uniprot.org/uniprot/Q42391 Q42391]
+
−
** [http://www.uniprot.org/uniprot/Q9L0L5 Q9L0L5]
+
−
** [http://www.uniprot.org/uniprot/Q53951 Q53951]
+
−
** [http://www.uniprot.org/uniprot/Q42803 Q42803]
+
−
** [http://www.uniprot.org/uniprot/Q42425 Q42425]
+
−
** [http://www.uniprot.org/uniprot/Q55128 Q55128]
+
−
** [http://www.uniprot.org/uniprot/P72859 P72859]
+
−
** [http://www.uniprot.org/uniprot/Q55453 Q55453]
+
−
** [http://www.uniprot.org/uniprot/Q55679 Q55679]
+
−
** [http://www.uniprot.org/uniprot/O48598 O48598]
+
−
** [http://www.uniprot.org/uniprot/Q42991 Q42991]
+
−
** [http://www.uniprot.org/uniprot/P46248 P46248]
+
−
** [http://www.uniprot.org/uniprot/O48548 O48548]
+
−
** [http://www.uniprot.org/uniprot/Q60013 Q60013]
+
−
** [http://www.uniprot.org/uniprot/P28734 P28734]
+
−
** [http://www.uniprot.org/uniprot/Q17994 Q17994]
+
−
** [http://www.uniprot.org/uniprot/Q17983 Q17983]
+
−
** [http://www.uniprot.org/uniprot/Q22066 Q22066]
+
−
** [http://www.uniprot.org/uniprot/Q22067 Q22067]
+
−
** [http://www.uniprot.org/uniprot/O01804 O01804]
+
−
** [http://www.uniprot.org/uniprot/O54170 O54170]
+
−
** [http://www.uniprot.org/uniprot/O42652 O42652]
+
−
** [http://www.uniprot.org/uniprot/O94320 O94320]
+
−
** [http://www.uniprot.org/uniprot/P46644 P46644]
+
−
** [http://www.uniprot.org/uniprot/P00504 P00504]
+
−
** [http://www.uniprot.org/uniprot/P00508 P00508]
+
−
** [http://www.uniprot.org/uniprot/P00509 P00509]
+
−
** [http://www.uniprot.org/uniprot/P00505 P00505]
+
−
** [http://www.uniprot.org/uniprot/P00503 P00503]
+
−
** [http://www.uniprot.org/uniprot/P00506 P00506]
+
−
** [http://www.uniprot.org/uniprot/P26563 P26563]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=aspartate aminotransferase}}
+
−
{{#set: common name=Aspartate aminotransferase}}
+
−
{{#set: common name=Aspartate transaminase}}
+
−
{{#set: common name=probable aspartate aminotransferase}}
+
−
{{#set: ec number=EC-2.6.1.1}}
+
−
{{#set: gene associated=CHC_T00006498001_1|CHC_T00010197001|CHC_T00009477001|CHC_T00005085001_1|CHC_T00008432001|CHC_T00010017001|CHC_T00003344001_1|CHC_T00009477001_1}}
+
−
{{#set: in pathway=ASPARAGINE-DEG1-PWY-1|PWY-7383|ASPARTATE-DEG1-PWY|ASPARTATESYN-PWY|PWY-5913|PWY-7117|GLUTDEG-PWY|PWY-7115|MALATE-ASPARTATE-SHUTTLE-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 14:56, 23 May 2018

Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • deoxyribodipyrimidine photolyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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