Difference between revisions of "RXN-16389"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPCARBTRANS-RXN ASPCARBTRANS-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.exp...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] == * direction: ** LEFT-TO-RIGHT * common name: ** long-chain-fatty-acid-CoA l...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPCARBTRANS-RXN ASPCARBTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** long-chain-fatty-acid-CoA ligase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.3.2 EC-2.1.3.2]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[16-HYDROXYPALMITATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CPD-17621]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 carbamoyl phosphate[c] '''+''' 1 L-aspartate[c] '''<=>''' 1 N-carbamoyl-L-aspartate[c] '''+''' 1 phosphate[c] '''+''' 1 H+[c]
+
** 1 coenzyme A[c] '''+''' 1 16-hydroxypalmitate[c] '''+''' 1 ATP[c] '''=>''' 1 16-hydroxypalmitoyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00010056001_1]]
+
* Gene: [[CHC_T00008500001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009428001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008811001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009428001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008160001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008811001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
+
* [[PWY-321]], cutin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-321 PWY-321]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
+
* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
+
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''8''' reactions found over '''19''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20013 20013]
+
{{#set: common name=long-chain-fatty-acid-CoA ligase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-6.2.1.3}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01397 R01397]
+
{{#set: gene associated=CHC_T00008500001_1|CHC_T00009428001|CHC_T00008811001_1|CHC_T00009428001_1|CHC_T00008160001_1|CHC_T00008811001}}
−
* UNIPROT:
+
{{#set: in pathway=PWY-321|PWY-6733|PWY-1121}}
−
** [http://www.uniprot.org/uniprot/P08955 P08955]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P27708 P27708]
+
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
−
** [http://www.uniprot.org/uniprot/Q04595 Q04595]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q59711 Q59711]
+
−
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
+
−
** [http://www.uniprot.org/uniprot/P65616 P65616]
+
−
** [http://www.uniprot.org/uniprot/Q59712 Q59712]
+
−
** [http://www.uniprot.org/uniprot/Q9CF79 Q9CF79]
+
−
** [http://www.uniprot.org/uniprot/Q58976 Q58976]
+
−
** [http://www.uniprot.org/uniprot/P08421 P08421]
+
−
** [http://www.uniprot.org/uniprot/P0A786 P0A786]
+
−
** [http://www.uniprot.org/uniprot/P0A7F3 P0A7F3]
+
−
** [http://www.uniprot.org/uniprot/P19936 P19936]
+
−
** [http://www.uniprot.org/uniprot/Q58801 Q58801]
+
−
** [http://www.uniprot.org/uniprot/Q9PNJ6 Q9PNJ6]
+
−
** [http://www.uniprot.org/uniprot/P05654 P05654]
+
−
** [http://www.uniprot.org/uniprot/P0A1Z4 P0A1Z4]
+
−
** [http://www.uniprot.org/uniprot/P19910 P19910]
+
−
** [http://www.uniprot.org/uniprot/P07259 P07259]
+
−
** [http://www.uniprot.org/uniprot/P20054 P20054]
+
−
** [http://www.uniprot.org/uniprot/P05990 P05990]
+
−
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
+
−
** [http://www.uniprot.org/uniprot/Q09027 Q09027]
+
−
** [http://www.uniprot.org/uniprot/P49077 P49077]
+
−
** [http://www.uniprot.org/uniprot/Q9S983 Q9S983]
+
−
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
+
−
** [http://www.uniprot.org/uniprot/P74163 P74163]
+
−
** [http://www.uniprot.org/uniprot/Q43064 Q43064]
+
−
** [http://www.uniprot.org/uniprot/Q43086 Q43086]
+
−
** [http://www.uniprot.org/uniprot/Q43087 Q43087]
+
−
** [http://www.uniprot.org/uniprot/Q84493 Q84493]
+
−
** [http://www.uniprot.org/uniprot/Q9UAH8 Q9UAH8]
+
−
** [http://www.uniprot.org/uniprot/Q60252 Q60252]
+
−
** [http://www.uniprot.org/uniprot/P96174 P96174]
+
−
** [http://www.uniprot.org/uniprot/P96175 P96175]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.1.3.2}}
+
−
{{#set: gene associated=CHC_T00010056001_1}}
+
−
{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+

Revision as of 15:12, 23 May 2018

Reaction RXN-16389

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 16-hydroxypalmitate[c] + 1 ATP[c] => 1 16-hydroxypalmitoyl-CoA[c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-321, cutin biosynthesis: PWY-321
    • 2 reactions found over 16 reactions in the full pathway
  • PWY-6733, sporopollenin precursors biosynthesis: PWY-6733
    • 5 reactions found over 18 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 8 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-16389&oldid=13683"