Difference between revisions of "CRNFORCAT-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formate--te...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14025 RXN-14025] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14025 RXN-14025] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** formate--tetrahydrofolate ligase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.4.3 EC-6.3.4.3]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[THF-GLU-N]][c] '''=>''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[UMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[URIDINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 formate[c] '''+''' 1 a tetrahydrofolate[c] '''=>''' 1 an N10-formyl-tetrahydrofolate[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
+
** 1 UMP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 uridine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00009198001]]
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* [[CHC_T00000267001_1]]
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** ORIGINAL_GENOME
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** [[pantograph]]-[[a.taliana]]
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00008300001_1]]
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* [[CHC_T00009198001_1]]
+
 
** [[pantograph]]-[[galdieria.sulphuraria]]
 
** [[pantograph]]-[[galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
+
* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
−
** '''5''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
+
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722]
+
* [[PWY-7821]], tunicamycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7821 PWY-7821]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
+
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
+
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[galdieria.sulphuraria]]
 
*** [[galdieria.sulphuraria]]
−
* [[annotation]]:
+
*** [[a.taliana]]
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20221 20221]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29360 29360]
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R00943 R00943]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P09440 P09440]
+
−
** [http://www.uniprot.org/uniprot/P13419 P13419]
+
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
+
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
+
−
** [http://www.uniprot.org/uniprot/P21164 P21164]
+
−
** [http://www.uniprot.org/uniprot/P28723 P28723]
+
−
** [http://www.uniprot.org/uniprot/Q9JVY8 Q9JVY8]
+
−
** [http://www.uniprot.org/uniprot/Q9CH07 Q9CH07]
+
−
** [http://www.uniprot.org/uniprot/Q07064 Q07064]
+
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=formate--tetrahydrofolate ligase}}
+
{{#set: ec number=EC-3.1.3.5}}
−
{{#set: ec number=EC-6.3.4.3}}
+
{{#set: gene associated=CHC_T00000267001_1|CHC_T00008300001_1}}
−
{{#set: gene associated=CHC_T00009198001|CHC_T00009198001_1}}
+
{{#set: in pathway=PWY-7185|PWY-7821}}
−
{{#set: in pathway=PWY-2201|PWY-2161|PWY-1722|CODH-PWY|PWY-3841}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 10:51, 18 January 2018

Reaction RXN-14025

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UMP[c] + 1 H2O[c] => 1 phosphate[c] + 1 uridine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7185, UTP and CTP dephosphorylation I: PWY-7185
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7821, tunicamycin biosynthesis: PWY-7821
    • 2 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CRNFORCAT-PWY&oldid=5072"