Difference between revisions of "GPPSYN-RXN"

Latest revision as of 10:12, 27 June 2019

Reaction GPPSYN-RXN

• ec number:
  • EC-2.5.1.1
• direction:
  • REVERSIBLE
• common name:
  • prenyltransferase
  • geranyl diphosphate synthase
  • dimethylallyltranstransferase
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 CPD-4211[c] + 1 DELTA3-ISOPENTENYL-PP[c] <=> 1 PPI[c] + 1 GERANYL-PP[c]
• With common name(s):
  • 1 dimethylallyl diphosphate[c] + 1 isopentenyl diphosphate[c] <=> 1 diphosphate[c] + 1 geranyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g16867.t1
  • Source: orthology-saccharina_japonica
• Gene: g8355.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g14450.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g8606.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g10765.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g4713.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g11610.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g9359.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g6290.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g13875.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g18026.t1
  • Source: orthology-saccharina_japonica
• Gene: g3782.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g7763.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g9967.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g3503.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g7849.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g13875.t2
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g8736.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g8181.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g11494.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g13172.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
• Gene: g12669.t1
  • Source: orthology-saccharina_japonica

Pathways

• PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
  • 3 reactions found over 4 reactions in the full pathway
• PWY-7709, (3R)-linalool biosynthesis: PWY-7709
  • 1 reactions found over 2 reactions in the full pathway
• PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
  • 3 reactions found over 3 reactions in the full pathway
• PWY-7410, ipsdienol biosynthesis: PWY-7410
  • 1 reactions found over 4 reactions in the full pathway
• PWY-7182, linalool biosynthesis I: PWY-7182
  • 1 reactions found over 2 reactions in the full pathway
• PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
  • 3 reactions found over 6 reactions in the full pathway
• PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
  • 2 reactions found over 5 reactions in the full pathway
• PWY-5122, geranyl diphosphate biosynthesis: PWY-5122
  • 1 reactions found over 1 reactions in the full pathway
• PWY-7141, (3S)-linalool biosynthesis: PWY-7141
  • 1 reactions found over 2 reactions in the full pathway
• PWY-7736, stellatic acid biosynthesis: PWY-7736
  • 3 reactions found over 8 reactions in the full pathway
• PWY-7659, viridicatumtoxin biosynthesis: PWY-7659
  • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
  • Source: orthology-nannochloropsis_salina
    • Tool: pantograph
  • Source: orthology-arabidopsis_thaliana
    • Tool: pantograph
• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools

External links

• UNIPROT:
  • P08524
  • P05369
  • P14324
  • P46376
  • Q45220
  • P49350
  • Q50891
  • P49349
  • Q09152
  • P49351
  • P49352
  • Q43315
  • O24241
  • O24242
  • Q92334
  • Q92218
  • Q92235
  • Q92250
  • Q8L7F4
  • P49353
  • O04882
  • O65004
• RHEA:
  • 22408
• LIGAND-RXN:
  • R01658