Difference between revisions of "IPPISOM-RXN"

Latest revision as of 10:13, 27 June 2019

Reaction IPPISOM-RXN

• ec number:
  • EC-5.3.3.2
• direction:
  • REVERSIBLE
• common name:
  • isopentenyl diphosphate isomerase
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 DELTA3-ISOPENTENYL-PP[c] <=> 1 CPD-4211[c]
• With common name(s):
  • 1 isopentenyl diphosphate[c] <=> 1 dimethylallyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g12669.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g15492.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica

Pathways

• PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
  • 3 reactions found over 4 reactions in the full pathway
• PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
  • 7 reactions found over 8 reactions in the full pathway
• PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
  • 3 reactions found over 3 reactions in the full pathway
• PWY-7524, mevalonate pathway III (archaea): PWY-7524
  • 5 reactions found over 8 reactions in the full pathway
• PWY-6174, mevalonate pathway II (archaea): PWY-6174
  • 6 reactions found over 7 reactions in the full pathway
• PWY-7560, methylerythritol phosphate pathway II: PWY-7560
  • 8 reactions found over 9 reactions in the full pathway
• PWY-922, mevalonate pathway I: PWY-922
  • 7 reactions found over 7 reactions in the full pathway
• PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
  • 3 reactions found over 6 reactions in the full pathway
• PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
  • 2 reactions found over 5 reactions in the full pathway
• NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
  • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-arabidopsis_thaliana
    • Tool: pantograph
  • Source: orthology-nannochloropsis_salina
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools

External links

• UNIPROT:
  • P15496
  • Q10132
  • Q38929
  • Q42553
  • P93355
  • O81691
  • Q9SAY0
  • O81660
  • O81659
• RHEA:
  • 23287
• LIGAND-RXN:
  • R01123