Difference between revisions of "1.14.11.1-RXN"

Latest revision as of 10:15, 27 June 2019

Reaction 1.14.11.1-RXN

• ec number:
  • EC-1.14.11.1
• direction:
  • LEFT-TO-RIGHT
• common name:
  • gamma-butyrobetaine dioxygenase
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 OXYGEN-MOLECULE[c] + 1 GAMMA-BUTYROBETAINE[c] + 1 2-KETOGLUTARATE[c] => 1 CARNITINE[c] + 1 SUC[c] + 1 CARBON-DIOXIDE[c]
• With common name(s):
  • 1 oxygen[c] + 1 γ-butyrobetaine[c] + 1 2-oxoglutarate[c] => 1 L-carnitine[c] + 1 succinate[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g9086.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica
• Gene: g13173.t1
  • Source: orthology-saccharina_japonica
• Gene: g9120.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-saccharina_japonica

Pathways

• PWY-3621, γ-butyrobetaine degradation: PWY-3621
  • 1 reactions found over 3 reactions in the full pathway
• PWY-6100, L-carnitine biosynthesis: PWY-6100
  • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools

External links

• RHEA:
  • 24029
• LIGAND-RXN:
  • R02397