Difference between revisions of "RXN1F-150"

Latest revision as of 10:16, 27 June 2019

Reaction RXN1F-150

• ec number:
  • EC-5.5.1.19
• direction:
  • LEFT-TO-RIGHT
• common name:
  • lycopene β-cyclase
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 CPD1F-114[c] => 1 CPD1F-126[c]
• With common name(s):
  • 1 all-trans-lycopene[c] => 1 γ-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g13259.t1
  • Source: orthology-arabidopsis_thaliana
• Gene: g13263.t1
  • Source: orthology-saccharina_japonica
• Gene: g12685.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g12686.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g12684.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g14467.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g11283.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g4115.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g18563.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g12687.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g14468.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g4142.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g11092.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g12244.t1
  • Source: orthology-ectocarpus_siliculosus
• Gene: g13113.t1
  • Source: orthology-arabidopsis_thaliana
• Gene: g13258.t1
  • Source: orthology-arabidopsis_thaliana
• Gene: g17199.t1
  • Source: orthology-arabidopsis_thaliana
• Gene: g10898.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica

Pathways

• PWY-7939, chlorobactene biosynthesis: PWY-7939
  • 1 reactions found over 2 reactions in the full pathway
• PWY-7938, isorenieratene biosynthesis I (actinobacteria): PWY-7938
  • 2 reactions found over 4 reactions in the full pathway
• PWY-5943, β-carotene biosynthesis: PWY-5943
  • 2 reactions found over 2 reactions in the full pathway
• PWY-7591, okenone biosynthesis: PWY-7591
  • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools
• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-arabidopsis_thaliana
    • Tool: pantograph
  • Source: orthology-nannochloropsis_salina
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph

External links

• RHEA:
  • 32222
• LIGAND-RXN:
  • R05341