Difference between revisions of "RXN0-2161"

Latest revision as of 11:25, 27 June 2019

Reaction RXN0-2161

• ec number:
  • EC-6.1.1.11
• direction:
  • LEFT-TO-RIGHT
• common name:
  • L-serine:tRNASec ligase (AMP-forming)
  • serine-tRNA ligase
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 tRNA-Sec[c] + 1 SER[c] + 1 ATP[c] => 1 AMP[c] + 1 L-seryl-SEC-tRNAs[c] + 1 PPI[c]
• With common name(s):
  • 1 a tRNAsec[c] + 1 L-serine[c] + 1 ATP[c] => 1 AMP[c] + 1 an L-seryl-[tRNAsec][c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g15275.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
• Gene: g15275.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g9305.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g9305.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER

Pathways

• PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
  • 4 reactions found over 4 reactions in the full pathway
• PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
  • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools
• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph

External links

• RHEA:
  • 42581
• LIGAND-RXN:
  • R08218