Difference between revisions of "3.1.26.5-RXN"

Latest revision as of 10:26, 27 June 2019

Reaction 3.1.26.5-RXN

• ec number:
  • EC-3.1.26.5
• direction:
  • LEFT-TO-RIGHT
• common name:
  • ribonuclease
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 CPD0-2352[c] + 1 WATER[c] => 1 CPD0-2353[c] + 1 tRNA-fragment[c]
• With common name(s):
  • 1 a tRNA precursor with a 5' extension and a short 3' extension[c] + 1 H2O[c] => 1 a tRNA precursor with a short 3' extension[c] + 1 a tRNA fragment[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g11431.t1
  • Source: orthology-saccharina_japonica
• Gene: g8375.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g17502.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g9800.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g12696.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g18801.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g16300.t2
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g18801.t2
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g15604.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g16300.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g8040.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g9045.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
• Gene: g6387.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica

Pathways

• PWY0-1479, tRNA processing: PWY0-1479
  • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools

External links

• UNIPROT:
  • Q02773
  • P41812
  • P0A5X8
  • P48206
  • Q9JW46
  • Q9PNX5
  • Q9CJ73
  • P29433
  • P25817
  • P22835
  • P25814
  • P0A7Y8
  • Q55005