Difference between revisions of "DIAMINOPIMDECARB-RXN"

Latest revision as of 10:31, 27 June 2019

Reaction DIAMINOPIMDECARB-RXN

• ec number:
  • EC-4.1.1.20
• direction:
  • LEFT-TO-RIGHT
• common name:
  • diaminopimelate decarboxylase
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 MESO-DIAMINOPIMELATE[c] + 1 PROTON[c] => 1 LYS[c] + 1 CARBON-DIOXIDE[c]
• With common name(s):
  • 1 meso-diaminopimelate[c] + 1 H+[c] => 1 L-lysine[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g4347.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-saccharina_japonica
• Gene: g7098.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica

Pathways

• PWY-5097, L-lysine biosynthesis VI: PWY-5097
  • 7 reactions found over 7 reactions in the full pathway
• DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
  • 7 reactions found over 9 reactions in the full pathway
• PWY-2941, L-lysine biosynthesis II: PWY-2941
  • 6 reactions found over 9 reactions in the full pathway
• PWY-2942, L-lysine biosynthesis III: PWY-2942
  • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools
• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
  • Source: orthology-nannochloropsis_salina
    • Tool: pantograph
  • Source: orthology-arabidopsis_thaliana
    • Tool: pantograph

External links

• UNIPROT:
  • P19572
  • P0A5M4
  • P44316
  • P56129
  • O67262
  • Q9JWA6
  • Q9CG26
  • P00861
  • O27390
  • Q9PII5
  • Q58497
  • O29458
  • P41023
  • P23630
  • P09890
  • Q55484
  • O05321
• RHEA:
  • 15102
• LIGAND-RXN:
  • R00451