Difference between revisions of "RXNARA-8002"

Latest revision as of 10:36, 27 June 2019

Reaction RXNARA-8002

• direction:
  • LEFT-TO-RIGHT
• common name:
  • geranylgeranyl-diphosphate geranylgeranyltransferase
• Synonym(s):
  • prephytoene-diphosphate synthase
  • PSase
  • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

• With identifiers:
  • 1 CPD-464[c] => 1 CPD-12321[c] + 1 PPI[c]
• With common name(s):
  • 1 prephytoene diphosphate[c] => 1 15-cis-phytoene[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g11610.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica

Pathways

• PWY-6287, neurosporene biosynthesis: PWY-6287
  • 5 reactions found over 5 reactions in the full pathway
• PWY-5942, trans-lycopene biosynthesis I: PWY-5942
  • 3 reactions found over 4 reactions in the full pathway
• PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): PWY-6475
  • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools

External links

• RHEA:
  • 34480
• LIGAND-RXN:
  • R07270