Difference between revisions of "OXALODECARB-RXN"

Latest revision as of 10:37, 27 June 2019

Reaction OXALODECARB-RXN

• ec number:
  • EC-1.1.1.40
  • EC-4.1.1.3
  • EC-1.1.1.38
• direction:
  • LEFT-TO-RIGHT
• common name:
  • malate dehydrogenase (decarboxylating) (NAD+)
  • oxaloacetate decarboxylase
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 OXALACETIC_ACID[c] + 1 PROTON[c] => 1 PYRUVATE[c] + 1 CARBON-DIOXIDE[c]
• With common name(s):
  • 1 oxaloacetate[c] + 1 H+[c] => 1 pyruvate[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g9346.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
• Gene: g5462.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g10342.t2
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g10342.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-saccharina_japonica
• Gene: g8130.t1
  • Source: orthology-saccharina_japonica

Pathways

• P184-PWY, protocatechuate degradation I (meta-cleavage pathway): P184-PWY
  • 2 reactions found over 8 reactions in the full pathway
• PWY-6339, syringate degradation: PWY-6339
  • 2 reactions found over 11 reactions in the full pathway
• METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation: METHYLGALLATE-DEGRADATION-PWY
  • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools

External links

• UNIPROT:
  • P13187
  • P13155
  • P13156
  • Q58628
• RHEA:
  • 15642
• LIGAND-RXN:
  • R00217