Difference between revisions of "CARBPSYN-RXN"

Latest revision as of 10:37, 27 June 2019

Reaction CARBPSYN-RXN

• ec number:
  • EC-6.3.5.5
• direction:
  • LEFT-TO-RIGHT
• common name:
  • carbamoyl phosphate synthetase
  • carbamoyl-phosphate synthase (glutamine-hydrolyzing)
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 GLN[c] + 1 HCO3[c] + 1 WATER[c] + 2 ATP[c] => 1 GLT[c] + 1 CARBAMOYL-P[c] + 2 ADP[c] + 1 Pi[c] + 2 PROTON[c]
• With common name(s):
  • 1 L-glutamine[c] + 1 hydrogencarbonate[c] + 1 H2O[c] + 2 ATP[c] => 1 L-glutamate[c] + 1 carbamoyl phosphate[c] + 2 ADP[c] + 1 phosphate[c] + 2 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g9568.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-arabidopsis_thaliana
• Gene: g18603.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-saccharina_japonica
• Gene: g9567.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-saccharina_japonica
• Gene: g14480.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: GO-TERM
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-saccharina_japonica

Pathways

• PWY-5686, UMP biosynthesis I: PWY-5686
  • 6 reactions found over 6 reactions in the full pathway
• PWY-7790, UMP biosynthesis II: PWY-7790
  • 5 reactions found over 6 reactions in the full pathway
• ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
  • 9 reactions found over 9 reactions in the full pathway
• PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline): PWY-5154
  • 8 reactions found over 9 reactions in the full pathway
• PWY-7791, UMP biosynthesis III: PWY-7791
  • 5 reactions found over 6 reactions in the full pathway
• ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
  • 5 reactions found over 6 reactions in the full pathway
• PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
  • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools
• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-arabidopsis_thaliana
    • Tool: pantograph
  • Source: orthology-nannochloropsis_salina
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph

External links

• UNIPROT:
  • P08955
  • P13258
  • P38099
  • P27708
  • Q91437
  • O28994
  • P57689
  • P38098
  • Q9WZ27
  • Q9PMG8
  • Q9JXW8
  • Q9JVZ6
  • P25993
  • Q9PIL7
  • P25994
  • Q9JW02
  • O25577
  • P52557
  • P46537
  • P18185
  • P07259
  • P20054
  • P05990
  • P14845
  • Q06950
  • Q92115
  • Q09794
  • P03965
  • P07258
  • P00968
  • P0A6F1
  • P93345
  • Q27732
  • Q27448
  • O50236
  • O94313
  • Q59968
  • Q59969
  • O50301
  • O50302
• RHEA:
  • 18634
• LIGAND-RXN:
  • R00575