Difference between revisions of "RIBULP3EPIM-RXN"

Latest revision as of 10:41, 27 June 2019

Reaction RIBULP3EPIM-RXN

• ec number:
  • EC-5.1.3.1
• direction:
  • REVERSIBLE
• common name:
  • ribulose-5-phosphate 3-epimerase
• Synonym(s):

Reaction Formula

• With identifiers:
  • 1 RIBULOSE-5P[c] <=> 1 XYLULOSE-5-PHOSPHATE[c]
• With common name(s):
  • 1 D-ribulose 5-phosphate[c] <=> 1 D-xylulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

• Gene: g15309.t1
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g9740.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER
  • Source: orthology-ectocarpus_siliculosus
  • Source: orthology-nannochloropsis_salina
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-arabidopsis_thaliana
  • Source: orthology-saccharina_japonica
• Gene: g15309.t1
  • Source: annotation-cladosiphon_okamuranus
    • Assignment: EC-NUMBER

Pathways

• CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
  • 12 reactions found over 13 reactions in the full pathway
• P21-PWY, pentose phosphate pathway (partial): P21-PWY
  • 3 reactions found over 3 reactions in the full pathway
• P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
  • 11 reactions found over 12 reactions in the full pathway
• P122-PWY, heterolactic fermentation: P122-PWY
  • 17 reactions found over 18 reactions in the full pathway
• P124-PWY, Bifidobacterium shunt: P124-PWY
  • 12 reactions found over 15 reactions in the full pathway
• PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle): PWY-1861
  • 7 reactions found over 9 reactions in the full pathway
• NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
  • 5 reactions found over 5 reactions in the full pathway
• PWY-5723, Rubisco shunt: PWY-5723
  • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

• Category: orthology
  • Source: orthology-saccharina_japonica
    • Tool: pantograph
  • Source: orthology-arabidopsis_thaliana
    • Tool: pantograph
  • Source: orthology-nannochloropsis_salina
    • Tool: pantograph
  • Source: orthology-ectocarpus_siliculosus
    • Tool: pantograph
• Category: annotation
  • Source: annotation-cladosiphon_okamuranus
    • Tool: pathwaytools

External links

• UNIPROT:
  • P40117
  • Q9CEB9
  • P0AG07
  • Q9PI57
  • Q9JUA9
  • P45455
  • Q43157
  • Q43843
  • P74061
  • O23782
  • P51012
• RHEA:
  • 13680
• LIGAND-RXN:
  • R01529