3.1.27.9-RXN
From metabolic_network
Revision as of 10:15, 27 June 2019 by Dyliss (Talk | contribs) (Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * ec number: ** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16] *...")
Contents
Reaction 3.1.27.9-RXN
- ec number:
- direction:
- LEFT-TO-RIGHT
- common name:
- tRNA-splicing endonuclease subunit Sen2
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CPD0-2350[c] => 1 Pre-tRNA-5-prime-half-molecules[c] + 1 Pre-tRNA-3-prime-half-molecules[c] + 1 tRNA-Introns[c]
- With common name(s):
- 1 a polycistronic tRNA precursor[c] => 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] + 1 a 3'-half-tRNA molecule with a 5'-OH end[c] + 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: g6611.t1
- Source: annotation-cladosiphon_okamuranus
- Assignment: EC-NUMBER
- Source: orthology-saccharina_japonica
- Source: annotation-cladosiphon_okamuranus
- Gene: g7360.t1
- Source: annotation-cladosiphon_okamuranus
- Assignment: EC-NUMBER
- Source: orthology-saccharina_japonica
- Source: annotation-cladosiphon_okamuranus
- Gene: g8270.t1
- Source: orthology-ectocarpus_siliculosus
Pathways
- PWY-6689, tRNA splicing I: PWY-6689
- 2 reactions found over 7 reactions in the full pathway
- PWY-7803, tRNA splicing II: PWY-7803
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-saccharina_japonica
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-saccharina_japonica
- Category: annotation
- Source: annotation-cladosiphon_okamuranus
- Tool: pathwaytools
- Source: annotation-cladosiphon_okamuranus
External links
- UNIPROT:
