### LOG ###
aureme --run=e_siliculosus --cmd="check_input"
aureme --run=e_siliculosus --cmd="annotation_based"
aureme --run=e_siliculosus --cmd="orthology_based"
aureme --run=e_siliculosus --cmd="sbml_mapping SBML=output_pantograph_aragem.sbml DB=metacyc"
aureme --run=e_siliculosus --cmd="draft"
aureme --run=e_siliculosus --cmd="curation NETWORK=draft NEW_NETWORK=draft_curated1 DATA=1_cycRxns_to_add.csv"
aureme --run=e_siliculosus --cmd="curation NETWORK=draft_curated1 DATA=1_keggRxns_to_add.csv"
aureme --run=e_siliculosus --cmd="curation NETWORK=draft_curated1 DATA=1_reaction_to_delete.csv"
aureme --run=e_siliculosus --cmd="set_medium NETWORK=draft_curated1 NEW_NETWORK=draft_medium"
aureme --run=e_siliculosus --cmd="gap_filling NETWORK=draft_medium NEW_NETWORK=draft_gapfilled"
aureme --run=e_siliculosus --cmd="get_compart NETWORK=draft_gapfilled"
aureme --run=e_siliculosus --cmd="change_compart OLD=C_c NEW=c NETWORK=draft_gapfilled"
aureme --run=e_siliculosus --cmd="change_compart OLD=C_m NEW=m NETWORK=draft_gapfilled"
aureme --run=e_siliculosus --cmd="change_compart OLD=C_p NEW=p NETWORK=draft_gapfilled"
aureme --run=e_siliculosus --cmd="change_compart OLD=C_v NEW=v NETWORK=draft_gapfilled"
aureme --run=e_siliculosus --cmd="change_compart OLD=C_x NEW=x NETWORK=draft_gapfilled"
aureme --run=e_siliculosus --cmd="change_compart OLD=C_m NEW=m NETWORK=draft_gapfilled"
aureme --run=e_siliculosus --cmd="curation NETWORK=draft_gapfilled DATA=2_cycRxns_to_add.csv NEW_NETWORK=ESiliculosus_final"
aureme --run=e_siliculosus --cmd="curation NETWORK=ESiliculosus_final DATA=2_lightRxns_to_add.csv"
aureme --run=e_siliculosus --cmd="curation NETWORK=ESiliculosus_final DATA=2_biomass_rxn.csv"
aureme --run=e_siliculosus --cmd="set_fba ID=biomass_rxn NETWORK=ESiliculosus_final"
aureme --run=e_siliculosus --cmd="summary NETWORK=ESiliculosus_final"
aureme --run=e_siliculosus --cmd="wiki_pages NETWORK=ESiliculosus_final ID=ECTO NAME=Ectocarpus_Siliculosus"