Difference between revisions of "LYSINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** Aspartate Amin...")
(Created page with "Category:Gene == Gene Ec-18_002500 == * left end position: ** 2395158 * transcription direction: ** NEGATIVE * right end position: ** 2400126 * centisome position: ** 48.6...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] ==
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== Gene Ec-18_002500 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 2395158
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* common name:
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* transcription direction:
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** Aspartate Aminotransferase
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** NEGATIVE
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** aspartate aminotransferase
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* right end position:
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** Pyridoxal phosphate-dependent transferase, major region, subdomain 1
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** 2400126
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
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** 48.61728   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0053_0108
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** Esi0053_0108
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[HISTONE-ACETYLTRANSFERASE-RXN]]
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** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[GLT]][c]
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* With common name(s):
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** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 oxaloacetate[c] '''+''' 1 L-glutamate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-23_003500]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-03_003270]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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** [[pantograph]]-[[aragem]]
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** [[pantograph]]-[[aragem]]
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* [[Ec-01_007480]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2395158}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21824 21824]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2400126}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355]
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{{#set: centisome position=48.61728    }}
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* UNIPROT:
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{{#set: common name=Esi_0053_0108|Esi0053_0108}}
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** [http://www.uniprot.org/uniprot/Q7LZ21 Q7LZ21]
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{{#set: reaction associated=HISTONE-ACETYLTRANSFERASE-RXN}}
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** [http://www.uniprot.org/uniprot/P08906 P08906]
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** [http://www.uniprot.org/uniprot/P12343 P12343]
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** [http://www.uniprot.org/uniprot/Q06191 Q06191]
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** [http://www.uniprot.org/uniprot/Q02635 Q02635]
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** [http://www.uniprot.org/uniprot/Q60317 Q60317]
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** [http://www.uniprot.org/uniprot/O28151 O28151]
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** [http://www.uniprot.org/uniprot/O67781 O67781]
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** [http://www.uniprot.org/uniprot/P08907 P08907]
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** [http://www.uniprot.org/uniprot/P12345 P12345]
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** [http://www.uniprot.org/uniprot/Q9X0Y2 Q9X0Y2]
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** [http://www.uniprot.org/uniprot/Q9PPF7 Q9PPF7]
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** [http://www.uniprot.org/uniprot/Q9JVS3 Q9JVS3]
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** [http://www.uniprot.org/uniprot/P53001 P53001]
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** [http://www.uniprot.org/uniprot/P96847 P96847]
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** [http://www.uniprot.org/uniprot/Q9K0P5 Q9K0P5]
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** [http://www.uniprot.org/uniprot/Q9X224 Q9X224]
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** [http://www.uniprot.org/uniprot/Q9Y9P0 Q9Y9P0]
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** [http://www.uniprot.org/uniprot/Q9RWP3 Q9RWP3]
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** [http://www.uniprot.org/uniprot/O66737 O66737]
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** [http://www.uniprot.org/uniprot/O28650 O28650]
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** [http://www.uniprot.org/uniprot/O30304 O30304]
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** [http://www.uniprot.org/uniprot/Q9CEK7 Q9CEK7]
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** [http://www.uniprot.org/uniprot/O27916 O27916]
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** [http://www.uniprot.org/uniprot/O05237 O05237]
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** [http://www.uniprot.org/uniprot/Q9YE99 Q9YE99]
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** [http://www.uniprot.org/uniprot/O25383 O25383]
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** [http://www.uniprot.org/uniprot/O27638 O27638]
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** [http://www.uniprot.org/uniprot/O96142 O96142]
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** [http://www.uniprot.org/uniprot/Q9ZLG5 Q9ZLG5]
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** [http://www.uniprot.org/uniprot/P00507 P00507]
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** [http://www.uniprot.org/uniprot/P44425 P44425]
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** [http://www.uniprot.org/uniprot/Q59569 Q59569]
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** [http://www.uniprot.org/uniprot/Q59197 Q59197]
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** [http://www.uniprot.org/uniprot/P37833 P37833]
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** [http://www.uniprot.org/uniprot/O48599 O48599]
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** [http://www.uniprot.org/uniprot/O33822 O33822]
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** [http://www.uniprot.org/uniprot/P05201 P05201]
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** [http://www.uniprot.org/uniprot/P05202 P05202]
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** [http://www.uniprot.org/uniprot/P14909 P14909]
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** [http://www.uniprot.org/uniprot/P17174 P17174]
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** [http://www.uniprot.org/uniprot/P33097 P33097]
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** [http://www.uniprot.org/uniprot/Q43057 Q43057]
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** [http://www.uniprot.org/uniprot/Q43305 Q43305]
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** [http://www.uniprot.org/uniprot/Q42794 Q42794]
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** [http://www.uniprot.org/uniprot/P12344 P12344]
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** [http://www.uniprot.org/uniprot/Q01802 Q01802]
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** [http://www.uniprot.org/uniprot/Q40325 Q40325]
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** [http://www.uniprot.org/uniprot/P36692 P36692]
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** [http://www.uniprot.org/uniprot/P28011 P28011]
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** [http://www.uniprot.org/uniprot/Q42391 Q42391]
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** [http://www.uniprot.org/uniprot/Q9L0L5 Q9L0L5]
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** [http://www.uniprot.org/uniprot/Q53951 Q53951]
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** [http://www.uniprot.org/uniprot/Q42803 Q42803]
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** [http://www.uniprot.org/uniprot/Q42425 Q42425]
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** [http://www.uniprot.org/uniprot/Q55128 Q55128]
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** [http://www.uniprot.org/uniprot/P72859 P72859]
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** [http://www.uniprot.org/uniprot/Q55453 Q55453]
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** [http://www.uniprot.org/uniprot/Q55679 Q55679]
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** [http://www.uniprot.org/uniprot/O48598 O48598]
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** [http://www.uniprot.org/uniprot/Q42991 Q42991]
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** [http://www.uniprot.org/uniprot/P46248 P46248]
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** [http://www.uniprot.org/uniprot/O48548 O48548]
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** [http://www.uniprot.org/uniprot/Q60013 Q60013]
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** [http://www.uniprot.org/uniprot/P28734 P28734]
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** [http://www.uniprot.org/uniprot/Q17994 Q17994]
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** [http://www.uniprot.org/uniprot/Q17983 Q17983]
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** [http://www.uniprot.org/uniprot/Q22066 Q22066]
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** [http://www.uniprot.org/uniprot/Q22067 Q22067]
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** [http://www.uniprot.org/uniprot/O01804 O01804]
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** [http://www.uniprot.org/uniprot/O54170 O54170]
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** [http://www.uniprot.org/uniprot/O42652 O42652]
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** [http://www.uniprot.org/uniprot/O94320 O94320]
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** [http://www.uniprot.org/uniprot/P46644 P46644]
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** [http://www.uniprot.org/uniprot/P00504 P00504]
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** [http://www.uniprot.org/uniprot/P00508 P00508]
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** [http://www.uniprot.org/uniprot/P00509 P00509]
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** [http://www.uniprot.org/uniprot/P00505 P00505]
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** [http://www.uniprot.org/uniprot/P00503 P00503]
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** [http://www.uniprot.org/uniprot/P00506 P00506]
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** [http://www.uniprot.org/uniprot/P26563 P26563]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Aspartate Aminotransferase}}
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{{#set: common name=aspartate aminotransferase}}
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{{#set: common name=Pyridoxal phosphate-dependent transferase, major region, subdomain 1}}
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{{#set: ec number=EC-2.6.1.1}}
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{{#set: gene associated=Ec-23_003500|Ec-03_003270|Ec-01_007480}}
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{{#set: in pathway=PWY-5913|PWY-7383|ASPARTATE-DEG1-PWY|ASPARTATESYN-PWY|PWY-7117|GLUTDEG-PWY|PWY-7115|MALATE-ASPARTATE-SHUTTLE-PWY|ASPARAGINE-DEG1-PWY-1}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:12, 21 March 2018

Gene Ec-18_002500

  • left end position:
    • 2395158
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 2400126
  • centisome position:
    • 48.61728
  • Synonym(s):
    • Esi_0053_0108
    • Esi0053_0108

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=LYSINE--TRNA-LIGASE-RXN&oldid=16530"