Difference between revisions of "3.5.1.88-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6961 PWY-6961] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** peptide deformylase *...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6961 PWY-6961] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** L-ascorbate degradation II (bacterial, aerobic)
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** peptide deformylase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.88 EC-3.5.1.88]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''8''' reactions in the full pathway
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* With identifiers:
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* [[RXN-12440]]
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** 1 [[FORMYL-L-METHIONYL-PEPTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[METHIONYL-PEPTIDE]][c] '''+''' 1 [[FORMATE]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-19_000230]]
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** 1 a [protein] N-terminal-formyl-L-methionine[c] '''+''' 1 H2O[c] '''=>''' 1 a [protein] N-terminal L-methionine[c] '''+''' 1 formate[c]
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*** [[Ec-02_001210]]
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*** [[Ec-02_001740]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-24_001990]]
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* [[RXN-12861]]
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** Source: [[annotation-esiliculosus_genome]]
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** 0 associated gene:
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*** Assignment: GO-TERM
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** 1 reconstruction source(s) associated:
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* Gene: [[Ec-24_001980]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-12862]]
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*** Assignment: GO-TERM
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** 0 associated gene:
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
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* Category: [[annotation]]
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== Reaction(s) not found ==
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=LXULRU5P-RXN LXULRU5P-RXN]
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*** Tool: [[pathwaytools]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RIBULPEPIM-RXN RIBULPEPIM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-703 RXN0-703]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-704 RXN0-704]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-705 RXN0-705]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6961 PWY-6961]
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** [http://www.genome.jp/dbget-bin/www_bget?R05635 R05635]
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{{#set: taxonomic range=TAX-2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=L-ascorbate degradation II (bacterial, aerobic)}}
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{{#set: common name=peptide deformylase}}
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{{#set: reaction found=3}}
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{{#set: ec number=EC-3.5.1.88}}
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{{#set: total reaction=8}}
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{{#set: gene associated=Ec-24_001990|Ec-24_001980}}
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{{#set: completion rate=38.0}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:17, 21 March 2018

Reaction 3.5.1.88-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptide deformylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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