Difference between revisions of "DGDPKIN-RXN"

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(Created page with "Category:Gene == Gene Ec-19_005290 == * left end position: ** 5681524 * transcription direction: ** NEGATIVE * right end position: ** 5684775 * centisome position: ** 95.1...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DGDPKIN-RXN DGDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-19_005290 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DGDPKIN-RXN DGDPKIN-RXN] ==
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* left end position:
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* direction:
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** 5681524
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** nucleoside diphosphate kinase
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* right end position:
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** Nucleoside diphosphate kinase
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** 5684775
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
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** 95.15694   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0154_0047
 
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** Esi0154_0047
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN]]
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* With identifiers:
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** [[pantograph]]-[[aragem]]
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** 1 [[ATP]][c] '''+''' 1 [[DGDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DGTP]][c]
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* [[OHACYL-COA-DEHYDROG-RXN]]
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* With common name(s):
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** esiliculosus_genome
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** 1 ATP[c] '''+''' 1 dGDP[c] '''=>''' 1 ADP[c] '''+''' 1 dGTP[c]
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***ec-number
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* [[RXN-10698]]
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== Genes associated with this reaction  ==
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** esiliculosus_genome
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* Gene: [[Ec-22_003280]]
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* [[RXN-10702]]
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** Source: [[annotation-esiliculosus_genome]]
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** esiliculosus_genome
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*** Assignment: GO-TERM
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***ec-number
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* Gene: [[Ec-26_003930]]
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* [[RXN-10703]]
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** Source: [[annotation-esiliculosus_genome]]
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** esiliculosus_genome
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*** Assignment: GO-TERM
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***ec-number
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* Gene: [[Ec-03_001380]]
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* [[RXN-11245]]
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** Source: [[annotation-esiliculosus_genome]]
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** esiliculosus_genome
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*** Assignment: GO-TERM
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***ec-number
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* Gene: [[Ec-07_000140]]
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* [[RXN-11662]]
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** Source: [[annotation-esiliculosus_genome]]
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** esiliculosus_genome
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*** Assignment: GO-TERM
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***ec-number
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* Gene: [[Ec-11_005170]]
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* [[RXN-12490]]
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** Source: [[annotation-esiliculosus_genome]]
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** esiliculosus_genome
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*** Assignment: GO-TERM
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***ec-number
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* Gene: [[Ec-11_004330]]
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* [[RXN-12570]]
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** Source: [[annotation-esiliculosus_genome]]
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** esiliculosus_genome
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[orthology-aragem]]
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* [[RXN-12705]]
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* Gene: [[Ec-04_001140]]
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** esiliculosus_genome
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** Source: [[annotation-esiliculosus_genome]]
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***ec-number
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*** Assignment: GO-TERM
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* [[RXN-12750]]
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** Source: [[orthology-aragem]]
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** esiliculosus_genome
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== Pathways ==
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***ec-number
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* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7222 PWY-7222]
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* [[RXN-16133]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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** esiliculosus_genome
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* [[PWY-7224]], purine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7224 PWY-7224]
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***ec-number
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[RXN-17777]]
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* [[PWY-7226]], guanosine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7226 PWY-7226]
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** esiliculosus_genome
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** '''2''' reactions found over '''2''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[RXN-17781]]
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* Category: [[orthology]]
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** esiliculosus_genome
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** Source: [[orthology-aragem]]
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***ec-number
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*** Tool: [[pantograph]]
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* [[RXN-17786]]
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* Category: [[annotation]]
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** esiliculosus_genome
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** Source: [[annotation-esiliculosus_genome]]
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***ec-number
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*** Tool: [[pathwaytools]]
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* [[RXN-17790]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17793]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17794]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17797]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-17798]]
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** esiliculosus_genome
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***ec-number
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* [[RXN-905]]
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** esiliculosus_genome
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***ec-number
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* [[RXN0-2044]]
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** esiliculosus_genome
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***ec-number
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== Pathways associated ==
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* [[P162-PWY]]
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* [[PWY-5177]]
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* [[PWY-6583]]
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* [[PWY-6883]]
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* [[PWY-5136]]
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* [[PWY-7778]]
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* [[PWY-7779]]
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* [[PWY-7094]]
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* [[PWY66-391]]
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* [[PWY-5789]]
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* [[PWY-81]]
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* [[CENTFERM-PWY]]
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* [[PWY-6945]]
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* [[PWY0-321]]
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* [[PWY-7007]]
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* [[PWY-6435]]
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* [[PWY-7216]]
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* [[PWY-1361]]
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* [[PWY-6946]]
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* [[FAO-PWY]]
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* [[PWY-6944]]
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* [[PWY-735]]
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* [[PWY-7401]]
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* [[PWY-6863]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=5681524}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27690 27690]
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{{#set: right end position=5684775}}
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* LIGAND-RXN:
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{{#set: centisome position=95.15694    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01857 R01857]
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{{#set: common name=Esi_0154_0047|Esi0154_0047}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN|OHACYL-COA-DEHYDROG-RXN|RXN-10698|RXN-10702|RXN-10703|RXN-11245|RXN-11662|RXN-12490|RXN-12570|RXN-12705|RXN-12750|RXN-16133|RXN-17777|RXN-17781|RXN-17786|RXN-17790|RXN-17793|RXN-17794|RXN-17797|RXN-17798|RXN-905|RXN0-2044}}
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{{#set: common name=nucleoside diphosphate kinase}}
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{{#set: pathway associated=P162-PWY|PWY-5177|PWY-6583|PWY-6883|PWY-5136|PWY-7778|PWY-7779|PWY-7094|PWY66-391|PWY-5789|PWY-81|CENTFERM-PWY|PWY-6945|PWY0-321|PWY-7007|PWY-6435|PWY-7216|PWY-1361|PWY-6946|FAO-PWY|PWY-6944|PWY-735|PWY-7401|PWY-6863}}
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{{#set: common name=Nucleoside diphosphate kinase}}
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{{#set: ec number=EC-2.7.4.6}}
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{{#set: gene associated=Ec-22_003280|Ec-26_003930|Ec-03_001380|Ec-07_000140|Ec-11_005170|Ec-11_004330|Ec-04_001140}}
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{{#set: in pathway=PWY-7222|PWY-7224|PWY-7226}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:51, 21 March 2018

Reaction DGDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside diphosphate kinase
    • Nucleoside diphosphate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 dGDP[c] => 1 ADP[c] + 1 dGTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7222, guanosine deoxyribonucleotides de novo biosynthesis II: PWY-7222
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7224, purine deoxyribonucleosides salvage: PWY-7224
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-7226, guanosine deoxyribonucleotides de novo biosynthesis I: PWY-7226
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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