Difference between revisions of "PROTOPORGENOXI-RXN"

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(Created page with "Category:Gene == Gene Ec-01_002810 == * left end position: ** 2390149 * transcription direction: ** NEGATIVE * right end position: ** 2403675 * centisome position: ** 23.1...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-01_002810 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
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* left end position:
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* direction:
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** 2390149
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** protoporphyrinogen oxidase, putative chloroplast precursor
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* right end position:
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* ec number:
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** 2403675
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** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
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* centisome position:
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** 23.162975   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0003_0144
 
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** Esi0003_0144
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[XYLULOKIN-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
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***automated-name-match
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* With common name(s):
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** [[pantograph]]-[[aragem]]
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** 3 oxygen[c] '''+''' 1 protoporphyrinogen IX[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
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== Pathways associated ==
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* [[DARABITOLUTIL-PWY]]
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== Genes associated with this reaction  ==
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* [[LARABITOLUTIL-PWY]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[XYLCAT-PWY]]
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* Gene: [[Ec-25_003100]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2390149}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
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{{#set: right end position=2403675}}
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* LIGAND-RXN:
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{{#set: centisome position=23.162975    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
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{{#set: common name=Esi_0003_0144|Esi0003_0144}}
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* UNIPROT:
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{{#set: reaction associated=XYLULOKIN-RXN}}
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** [http://www.uniprot.org/uniprot/P50336 P50336]
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{{#set: pathway associated=DARABITOLUTIL-PWY|LARABITOLUTIL-PWY|XYLCAT-PWY}}
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** [http://www.uniprot.org/uniprot/Q49404 Q49404]
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** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
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** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
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** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
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** [http://www.uniprot.org/uniprot/P51175 P51175]
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** [http://www.uniprot.org/uniprot/O24163 O24163]
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** [http://www.uniprot.org/uniprot/O24164 O24164]
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** [http://www.uniprot.org/uniprot/O64384 O64384]
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** [http://www.uniprot.org/uniprot/O64385 O64385]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=protoporphyrinogen oxidase, putative chloroplast precursor}}
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{{#set: ec number=EC-1.3.3.4}}
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{{#set: gene associated=Ec-25_003100}}
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{{#set: in pathway=PWY0-1415|PWY-7159|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:57, 21 March 2018

Reaction PROTOPORGENOXI-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • protoporphyrinogen oxidase, putative chloroplast precursor
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 5 reactions found over 9 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 6 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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