Difference between revisions of "3.5.1.88-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11524 CPD-11524] == * smiles: ** CCC=CCC4(C(=O)CCC(CCCC(=O)CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** peptide deformylase *...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11524 CPD-11524] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] ==
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* smiles:
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* direction:
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** CCC=CCC4(C(=O)CCC(CCCC(=O)CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=ADGIRVMSHGGGHU-JYNUABGASA-J
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* common name:
 
* common name:
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** OPC6-3-ketoacyl-CoA
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** peptide deformylase
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* molecular weight:
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* ec number:
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** 1025.85   
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** [http://enzyme.expasy.org/EC/3.5.1.88 EC-3.5.1.88]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-10702]]
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** 1 [[FORMYL-L-METHIONYL-PEPTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[METHIONYL-PEPTIDE]][c] '''+''' 1 [[FORMATE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 a [protein] N-terminal-formyl-L-methionine[c] '''+''' 1 H2O[c] '''=>''' 1 a [protein] N-terminal L-methionine[c] '''+''' 1 formate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-24_001990]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-24_001980]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=44237277 44237277]
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** [http://www.genome.jp/dbget-bin/www_bget?R05635 R05635]
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{{#set: smiles=CCC=CCC4(C(=O)CCC(CCCC(=O)CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: inchi key=InChIKey=ADGIRVMSHGGGHU-JYNUABGASA-J}}
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{{#set: common name=peptide deformylase}}
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{{#set: common name=OPC6-3-ketoacyl-CoA}}
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{{#set: ec number=EC-3.5.1.88}}
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{{#set: molecular weight=1025.85    }}
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{{#set: gene associated=Ec-24_001990|Ec-24_001980}}
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{{#set: produced by=RXN-10702}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:17, 21 March 2018

Reaction 3.5.1.88-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptide deformylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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