Difference between revisions of "RXN-12270"

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(Created page with "Category:Gene == Gene Ec-17_002680 == * left end position: ** 2865242 * transcription direction: ** POSITIVE * right end position: ** 2867734 * centisome position: ** 59.7...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycosyl hydrolase, family...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-17_002680 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] ==
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* left end position:
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* direction:
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** 2865242
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Glycosyl hydrolase, family 88
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* right end position:
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* ec number:
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** 2867734
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** [http://enzyme.expasy.org/EC/3.2.1.179 EC-3.2.1.179]
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* centisome position:
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** 59.718086   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0026_0123
 
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** Esi0026_0123
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[RXN0-2381]]
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* With identifiers:
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** 1 [[WATER]][c] '''+''' 1 [[CPD-13187]][c] '''=>''' 1 [[CPD-13122]][c] '''+''' 1 [[CPD-13188]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 unsaturated gellan tetrasaccharide[c] '''=>''' 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] '''+''' 1 β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-β-D-Glcp[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-02_002980]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* Reaction: [[RXN0-2382]]
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* Gene: [[Ec-02_002970]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* Reaction: [[TRYPSYN-RXN]]
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== Pathways  ==
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* [[PWY-6827]], gellan degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6827 PWY-6827]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[TRPSYN-PWY]]
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* [[PWY-6949]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=2865242}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31638 31638]
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{{#set: right end position=2867734}}
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* LIGAND-RXN:
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{{#set: centisome position=59.718086    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R09831 R09831]
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{{#set: common name=Esi_0026_0123|Esi0026_0123}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN0-2381|RXN0-2382|TRYPSYN-RXN}}
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{{#set: common name=Glycosyl hydrolase, family 88}}
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{{#set: pathway associated=TRPSYN-PWY|PWY-6949}}
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{{#set: ec number=EC-3.2.1.179}}
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{{#set: gene associated=Ec-02_002980|Ec-02_002970}}
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{{#set: in pathway=PWY-6827}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:34, 21 March 2018

Reaction RXN-12270

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycosyl hydrolase, family 88
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 unsaturated gellan tetrasaccharide[c] => 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] + 1 β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-β-D-Glcp[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6827, gellan degradation: PWY-6827
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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