Difference between revisions of "RXN-14897"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14897 RXN-14897] == * direction: ** LEFT-TO-RIGHT * common name: ** Pectin lyase fold * ec numb...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14897 RXN-14897] == * direction: ** LEFT-TO-RIGHT * common name: ** Pectin lyase fold * ec numb...")
 
(2 intermediate revisions by the same user not shown)
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== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-12_000410]]
+
* Gene: [[Ec-08_000940]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-13_002330]]
+
* Gene: [[Ec-04_001770]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-00_006370]]
+
* Gene: [[Ec-08_000930]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-18_004360]]
+
* Gene: [[Ec-18_004360]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-09_004230]]
+
* Gene: [[Ec-13_002310]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-25_001080]]
+
* Gene: [[Ec-21_001490]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-21_001360]]
+
* Gene: [[Ec-14_000190]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-08_000860]]
+
* Gene: [[Ec-12_000410]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-21_003140]]
+
* Gene: [[Ec-00_009490]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-00_011490]]
+
* Gene: [[Ec-21_003140]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-20_003120]]
+
* Gene: [[Ec-02_001170]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-14_000350]]
+
* Gene: [[Ec-08_000860]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-21_001490]]
+
* Gene: [[Ec-00_010800]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-09_004260]]
+
* Gene: [[Ec-13_002650]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-04_001770]]
+
* Gene: [[Ec-20_003100]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-14_004740]]
+
* Gene: [[Ec-02_001160]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-02_001170]]
+
* Gene: [[Ec-14_000350]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-08_000940]]
+
* Gene: [[Ec-00_006370]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-00_009490]]
+
* Gene: [[Ec-23_004040]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-20_003100]]
+
* Gene: [[Ec-25_001080]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-08_000930]]
+
* Gene: [[Ec-08_000920]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-14_000190]]
+
* Gene: [[Ec-13_002330]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-02_001160]]
+
* Gene: [[Ec-09_004260]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-08_000920]]
+
* Gene: [[Ec-09_004230]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-13_002640]]
+
* Gene: [[Ec-00_011490]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-00_010800]]
+
* Gene: [[Ec-14_004740]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-13_002310]]
+
* Gene: [[Ec-20_003120]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-23_004040]]
+
* Gene: [[Ec-21_001360]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-13_002650]]
+
* Gene: [[Ec-13_002640]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 
* [[PWY-7243]], pectin degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7243 PWY-7243]
 
* [[PWY-7243]], pectin degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7243 PWY-7243]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: common name=Pectin lyase fold}}
 
{{#set: common name=Pectin lyase fold}}
 
{{#set: ec number=EC-4.2.2.10}}
 
{{#set: ec number=EC-4.2.2.10}}
−
{{#set: gene associated=Ec-12_000410|Ec-13_002330|Ec-00_006370|Ec-18_004360|Ec-09_004230|Ec-25_001080|Ec-21_001360|Ec-08_000860|Ec-21_003140|Ec-00_011490|Ec-20_003120|Ec-14_000350|Ec-21_001490|Ec-09_004260|Ec-04_001770|Ec-14_004740|Ec-02_001170|Ec-08_000940|Ec-00_009490|Ec-20_003100|Ec-08_000930|Ec-14_000190|Ec-02_001160|Ec-08_000920|Ec-13_002640|Ec-00_010800|Ec-13_002310|Ec-23_004040|Ec-13_002650}}
+
{{#set: gene associated=Ec-08_000940|Ec-04_001770|Ec-08_000930|Ec-18_004360|Ec-13_002310|Ec-21_001490|Ec-14_000190|Ec-12_000410|Ec-00_009490|Ec-21_003140|Ec-02_001170|Ec-08_000860|Ec-00_010800|Ec-13_002650|Ec-20_003100|Ec-02_001160|Ec-14_000350|Ec-00_006370|Ec-23_004040|Ec-25_001080|Ec-08_000920|Ec-13_002330|Ec-09_004260|Ec-09_004230|Ec-00_011490|Ec-14_004740|Ec-20_003120|Ec-21_001360|Ec-13_002640}}
 
{{#set: in pathway=PWY-7243}}
 
{{#set: in pathway=PWY-7243}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Latest revision as of 19:01, 21 March 2018

Reaction RXN-14897

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pectin lyase fold
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a pectin[c] => 1 4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7243, pectin degradation I: PWY-7243
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-14897&oldid=23854"