Difference between revisions of "Ec-23 001960"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=URATE-OXIDASE-RXN URATE-OXIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** urate oxida...")
(Created page with "Category:Gene == Gene Ec-03_003490 == * left end position: ** 3961301 * transcription direction: ** POSITIVE * right end position: ** 3971637 * centisome position: ** 60.6...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=URATE-OXIDASE-RXN URATE-OXIDASE-RXN] ==
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== Gene Ec-03_003490 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3961301
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* common name:
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* transcription direction:
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** urate oxidase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/1.7.3.3 EC-1.7.3.3]
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** 3971637
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* centisome position:
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** 60.67555   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0223_0017
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** Esi0223_0017
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACYLCOADEHYDROG-RXN]]
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** 1 [[URATE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[5-HYDROXYISOURATE]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 urate[c] '''+''' 1 H2O[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 5-hydroxyisourate[c]
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* Reaction: [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14264]]
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* [[Ec-06_002470]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-5691]], urate degradation to allantoin I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5691 PWY-5691]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-17775]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17779]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17783]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17784]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17788]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17792]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17796]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[FAO-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3961301}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21368 21368]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3971637}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02106 R02106]
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{{#set: centisome position=60.67555    }}
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* UNIPROT:
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{{#set: common name=Esi_0223_0017|Esi0223_0017}}
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** [http://www.uniprot.org/uniprot/P04670 P04670]
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{{#set: reaction associated=ACYLCOADEHYDROG-RXN|LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN|RXN-14264|RXN-17775|RXN-17779|RXN-17783|RXN-17784|RXN-17788|RXN-17792|RXN-17796}}
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** [http://www.uniprot.org/uniprot/P16163 P16163]
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{{#set: pathway associated=FAO-PWY}}
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** [http://www.uniprot.org/uniprot/Q00511 Q00511]
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** [http://www.uniprot.org/uniprot/P33282 P33282]
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** [http://www.uniprot.org/uniprot/P25688 P25688]
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** [http://www.uniprot.org/uniprot/P16164 P16164]
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** [http://www.uniprot.org/uniprot/Q45697 Q45697]
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** [http://www.uniprot.org/uniprot/P78609 P78609]
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** [http://www.uniprot.org/uniprot/P09118 P09118]
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** [http://www.uniprot.org/uniprot/P11645 P11645]
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** [http://www.uniprot.org/uniprot/P23194 P23194]
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** [http://www.uniprot.org/uniprot/P34799 P34799]
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** [http://www.uniprot.org/uniprot/P34798 P34798]
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** [http://www.uniprot.org/uniprot/P53763 P53763]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=urate oxidase}}
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{{#set: ec number=EC-1.7.3.3}}
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{{#set: gene associated=Ec-06_002470}}
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{{#set: in pathway=PWY-5691}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 13:55, 21 March 2018

Gene Ec-03_003490

  • left end position:
    • 3961301
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3971637
  • centisome position:
    • 60.67555
  • Synonym(s):
    • Esi_0223_0017
    • Esi0223_0017

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-23_001960&oldid=22840"