Difference between revisions of "DETHIOBIOTIN-SYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinate dehydrogenase/fum...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DETHIOBIOTIN-SYN-RXN DETHIOBIOTIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Bifun...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DETHIOBIOTIN-SYN-RXN DETHIOBIOTIN-SYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
+
** Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase
−
** SDH1, succinate dehydrogenase subunit 1
+
−
** SDH3, succinate dehydrogenase subunit 3
+
−
** SDH2, succinate dehydrogenase subunit 2
+
−
** SDH4, succinate dehydrogenase subunit 4
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
+
** [http://enzyme.expasy.org/EC/6.3.3.3 EC-6.3.3.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ETR-Quinones]][c] '''+''' 1 [[SUC]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[FUM]][c]
+
** 1 [[DIAMINONONANOATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[DETHIOBIOTIN]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an electron-transfer quinone[c] '''+''' 1 succinate[c] '''=>''' 1 an electron-transfer quinol[c] '''+''' 1 fumarate[c]
+
** 1 7,8-diaminopelargonate[c] '''+''' 1 ATP[c] '''+''' 1 CO2[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 3 H+[c] '''+''' 1 dethiobiotin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-05_003640]]
+
* Gene: [[Ec-01_005750]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
−
* Gene: [[Ec-21_003470]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-07_002870]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-11_000360]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[Ec-27_006560]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-07_007310]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
+
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 51: Line 30:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15805 15805]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03182 R03182]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JV95 Q9JV95]
 +
** [http://www.uniprot.org/uniprot/Q9PIJ1 Q9PIJ1]
 +
** [http://www.uniprot.org/uniprot/P46397 P46397]
 +
** [http://www.uniprot.org/uniprot/P22818 P22818]
 +
** [http://www.uniprot.org/uniprot/P13000 P13000]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain}}
+
{{#set: common name=Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase}}
−
{{#set: common name=SDH1, succinate dehydrogenase subunit 1}}
+
{{#set: ec number=EC-6.3.3.3}}
−
{{#set: common name=SDH3, succinate dehydrogenase subunit 3}}
+
{{#set: gene associated=Ec-01_005750}}
−
{{#set: common name=SDH2, succinate dehydrogenase subunit 2}}
+
{{#set: in pathway=PWY0-1507|PWY-7380}}
−
{{#set: common name=SDH4, succinate dehydrogenase subunit 4}}
+
−
{{#set: ec number=EC-1.3.5.1}}
+
−
{{#set: gene associated=Ec-05_003640|Ec-21_003470|Ec-07_002870|Ec-11_000360|Ec-27_006560|Ec-07_007310}}
+
−
{{#set: in pathway=PWY-7254|P105-PWY|PWY-6969}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction DETHIOBIOTIN-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=DETHIOBIOTIN-SYN-RXN&oldid=28321"