Difference between revisions of "RXN-14224"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNDECARBOX-RXN ORNDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Ornithine decar...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** DNA-(apurinic or ap...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNDECARBOX-RXN ORNDECARBOX-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Ornithine decarboxylase
+
** DNA-(apurinic or apyrimidinic site) lyase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.17 EC-4.1.1.17]
+
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ORNITHINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[3-terminal-unsaturated-sugars]][c] '''+''' 1 [[5-Phosphopolynucleotides]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-ornithine[c] '''+''' 1 H+[c] '''=>''' 1 putrescine[c] '''+''' 1 CO2[c]
+
** 1 a DNA containing an apurinic/apyrimidinic site[c] '''=>''' 1 a 3'-terminal unsaturated sugar[c] '''+''' 1 a 5'-phosphopolynucleotide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-11_003270]]
+
* [[Ec-01_006350]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
−
***EC-NUMBER
+
***GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[ORNDEG-PWY]], superpathway of ornithine degradation: [http://metacyc.org/META/NEW-IMAGE?object=ORNDEG-PWY ORNDEG-PWY]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-46]], putrescine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-46 PWY-46]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22964 22964]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00670 R00670]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P24169 P24169]
+
** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
−
** [http://www.uniprot.org/uniprot/P27121 P27121]
+
** [http://www.uniprot.org/uniprot/P28352 P28352]
−
** [http://www.uniprot.org/uniprot/P27116 P27116]
+
** [http://www.uniprot.org/uniprot/Q58829 Q58829]
−
** [http://www.uniprot.org/uniprot/P27120 P27120]
+
** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
−
** [http://www.uniprot.org/uniprot/P43099 P43099]
+
** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
−
** [http://www.uniprot.org/uniprot/Q9X2I6 Q9X2I6]
+
** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
−
** [http://www.uniprot.org/uniprot/P08432 P08432]
+
** [http://www.uniprot.org/uniprot/P44319 P44319]
−
** [http://www.uniprot.org/uniprot/P27118 P27118]
+
** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
−
** [http://www.uniprot.org/uniprot/P11926 P11926]
+
** [http://www.uniprot.org/uniprot/P04418 P04418]
−
** [http://www.uniprot.org/uniprot/P14019 P14019]
+
** [http://www.uniprot.org/uniprot/P27695 P27695]
−
** [http://www.uniprot.org/uniprot/P00860 P00860]
+
** [http://www.uniprot.org/uniprot/P23196 P23196]
−
** [http://www.uniprot.org/uniprot/P09057 P09057]
+
** [http://www.uniprot.org/uniprot/P22936 P22936]
−
** [http://www.uniprot.org/uniprot/Q9TZZ6 Q9TZZ6]
+
** [http://www.uniprot.org/uniprot/P43138 P43138]
−
** [http://www.uniprot.org/uniprot/P44317 P44317]
+
** [http://www.uniprot.org/uniprot/P95945 P95945]
−
** [http://www.uniprot.org/uniprot/O66940 O66940]
+
** [http://www.uniprot.org/uniprot/P50525 P50525]
−
** [http://www.uniprot.org/uniprot/P27119 P27119]
+
−
** [http://www.uniprot.org/uniprot/P49725 P49725]
+
−
** [http://www.uniprot.org/uniprot/P50134 P50134]
+
−
** [http://www.uniprot.org/uniprot/P93351 P93351]
+
−
** [http://www.uniprot.org/uniprot/P93357 P93357]
+
−
** [http://www.uniprot.org/uniprot/O15696 O15696]
+
−
** [http://www.uniprot.org/uniprot/Q84527 Q84527]
+
−
** [http://www.uniprot.org/uniprot/P41931 P41931]
+
−
** [http://www.uniprot.org/uniprot/O69865 O69865]
+
−
** [http://www.uniprot.org/uniprot/Q9UQW9 Q9UQW9]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Ornithine decarboxylase}}
+
{{#set: common name=DNA-(apurinic or apyrimidinic site) lyase}}
−
{{#set: ec number=EC-4.1.1.17}}
+
{{#set: ec number=EC-4.2.99.18}}
−
{{#set: gene associated=Ec-11_003270}}
+
{{#set: gene associated=Ec-01_006350}}
−
{{#set: in pathway=ORNDEG-PWY|PWY-6305|PWY-46}}
+
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 21:56, 17 March 2018

Reaction 4.2.99.18-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • DNA-(apurinic or apyrimidinic site) lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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