Difference between revisions of "GPH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9528 RXN-9528] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-decanoyl-[acyl-carrier...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-122...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9528 RXN-9528] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
 
* common name:
 
* common name:
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** 3-oxo-decanoyl-[acyl-carrier protein] reductase
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** pyruvate fermentation to butanoate
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** NAD(P)-binding domain
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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* Synonym(s):
 
* Synonym(s):
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** central fermentation pathway
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** acetobutylicum fermentation
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** pyruvate fermentation to butyrate
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''7''' reactions in the full pathway
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** 1 [[NADPH]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Beta-hydroxydecanoyl-ACPs]][c]
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 NADPH[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxydecanoyl-[acp][c]
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*** [[Ec-26_003940]]
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*** [[Ec-24_000870]]
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== Genes associated with this reaction  ==
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*** [[Ec-22_002850]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* [[Ec-01_007100]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** [[orthology-aragem]]
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***EC-NUMBER
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* [[PYRUFLAVREDUCT-RXN]]
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== Pathways  ==
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** 3 associated gene(s):
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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*** [[Ec-23_002710]]
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** '''28''' reactions found over '''31''' reactions in the full pathway
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*** [[Ec-15_004230]]
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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*** [[Ec-18_003420]]
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** '''20''' reactions found over '''31''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
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* [[annotation]]:
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* [[RXN-11662]]
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** [[pathwaytools]]:
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** 2 associated gene(s):
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*** [[esiliculosus_genome]]
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*** [[Ec-19_005290]]
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*** [[Ec-14_006530]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-11667]]
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** 2 associated gene(s):
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*** [[Ec-17_000320]]
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*** [[Ec-14_006530]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRATE-KINASE-RXN BUTYRATE-KINASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHATE-BUTYRYLTRANSFERASE-RXN PHOSPHATE-BUTYRYLTRANSFERASE-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: common name=3-oxo-decanoyl-[acyl-carrier protein] reductase}}
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{{#set: taxonomic range=TAX-1239}}
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{{#set: common name=NAD(P)-binding domain}}
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{{#set: common name=pyruvate fermentation to butanoate}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: common name=central fermentation pathway|acetobutylicum fermentation|pyruvate fermentation to butyrate}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: reaction found=4}}
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{{#set: ec number=EC-1.1.1.100}}
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{{#set: total reaction=7}}
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{{#set: gene associated=Ec-01_007100}}
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{{#set: completion rate=57.0}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Revision as of 22:04, 17 March 2018

Pathway CENTFERM-PWY

  • taxonomic range:
  • common name:
    • pyruvate fermentation to butanoate
  • Synonym(s):
    • central fermentation pathway
    • acetobutylicum fermentation
    • pyruvate fermentation to butyrate

Reaction(s) found

4 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=GPH-RXN&oldid=11498"