Difference between revisions of "XYLULOSE-5-PHOSPHATE"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=S-HYDROXYMETHYLGLUTATHIONE S-HYDROXYMETHYLGLUTATHIONE] == * smiles: ** C(NC(=O)C(CSCO)NC(=O)CCC...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] == * direction: ** L...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=S-HYDROXYMETHYLGLUTATHIONE S-HYDROXYMETHYLGLUTATHIONE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] ==
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* smiles:
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* direction:
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** C(NC(=O)C(CSCO)NC(=O)CCC([N+])C(=O)[O-])C(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=PIUSLWSYOYFRFR-BQBZGAKWSA-M
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* common name:
 
* common name:
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** S-hydroxymethylglutathione
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** Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
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* molecular weight:
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** SDH1, succinate dehydrogenase subunit 1
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** 336.339   
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** SDH3, succinate dehydrogenase subunit 3
 +
** SDH2, succinate dehydrogenase subunit 2
 +
** SDH4, succinate dehydrogenase subunit 4
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
 
* Synonym(s):
 
* Synonym(s):
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** glycine, N-(N-γ-L-S-(hydroxymethyl)-L-cysteinyl)-
 
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** HMGSH
 
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** HM-GSH
 
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** GS-CH2-OH
 
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** hydroxymethylglutathione
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-2961]]
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* With identifiers:
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* [[RXN-2962]]
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** 1 [[SUC]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 1 [[FUM]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 succinate[c] '''+''' 1 a ubiquinone[c] '''=>''' 1 an ubiquinol[c] '''+''' 1 fumarate[c]
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* [[RXN0-276]]
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 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Ec-07_002870]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-07_007310]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
 +
* [[Ec-11_000360]]
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** ESILICULOSUS_GENOME
 +
***EC-NUMBER
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* [[Ec-21_003470]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
 +
* [[Ec-05_003640]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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* [[Ec-27_006560]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4302 PWY-4302]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3781]], aerobic respiration I (cytochrome c): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3781 PWY-3781]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7279 PWY-7279]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY0-1329]], succinate to cytochrome bo oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1329 PWY0-1329]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1353]], succinate to cytochrome bd oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1353 PWY0-1353]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* BIGG : 2325420
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13713 13713]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25244017 25244017]
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* LIGAND-RXN:
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* HMDB : HMDB04662
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** [http://www.genome.jp/dbget-bin/www_bget?R02164 R02164]
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* LIGAND-CPD:
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* PIR:
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** [http://www.genome.jp/dbget-bin/www_bget?C14180 C14180]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T50081 T50081]
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* CHEBI:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46878 T46878]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58758 58758]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41753 T41753]
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* METABOLIGHTS : MTBLC58758
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T37633 T37633]
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{{#set: smiles=C(NC(=O)C(CSCO)NC(=O)CCC([N+])C(=O)[O-])C(=O)[O-]}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11245 T11245]
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{{#set: inchi key=InChIKey=PIUSLWSYOYFRFR-BQBZGAKWSA-M}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11229 T11229]
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{{#set: common name=S-hydroxymethylglutathione}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11218 T11218]
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{{#set: molecular weight=336.339    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78180 S78180]
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{{#set: common name=glycine, N-(N-γ-L-S-(hydroxymethyl)-L-cysteinyl)-|HMGSH|HM-GSH|GS-CH2-OH|hydroxymethylglutathione}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78179 S78179]
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{{#set: consumed by=RXN-2961|RXN-2962}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78178 S78178]
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{{#set: consumed or produced by=RXN0-276}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74810 S74810]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62756 S62756]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62755 S62755]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59115 S59115]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59114 S59114]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56817 S56817]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S34793 S34793]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26978 S26978]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S25968 S25968]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=RDBYIS RDBYIS]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PT0094 PT0094]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0336 JX0336]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38895 I38895]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81388 D81388]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D71712 D71712]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D32394 D32394]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C32394 C32394]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B58930 B58930]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B32394 B32394]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56660 A56660]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A45159 A45159]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A42792 A42792]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P35720 P35720]
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** [http://www.uniprot.org/uniprot/Q26266 Q26266]
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** [http://www.uniprot.org/uniprot/P21913 P21913]
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** [http://www.uniprot.org/uniprot/Q9ZZR2 Q9ZZR2]
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** [http://www.uniprot.org/uniprot/P21911 P21911]
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** [http://www.uniprot.org/uniprot/Q9ZEA1 Q9ZEA1]
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** [http://www.uniprot.org/uniprot/Q9PI67 Q9PI67]
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** [http://www.uniprot.org/uniprot/P21912 P21912]
 +
** [http://www.uniprot.org/uniprot/P31040 P31040]
 +
** [http://www.uniprot.org/uniprot/Q9CQA3 Q9CQA3]
 +
** [http://www.uniprot.org/uniprot/P21801 P21801]
 +
** [http://www.uniprot.org/uniprot/P35721 P35721]
 +
** [http://www.uniprot.org/uniprot/P32420 P32420]
 +
** [http://www.uniprot.org/uniprot/Q00711 Q00711]
 +
** [http://www.uniprot.org/uniprot/P47052 P47052]
 +
** [http://www.uniprot.org/uniprot/P48932 P48932]
 +
** [http://www.uniprot.org/uniprot/P48934 P48934]
 +
** [http://www.uniprot.org/uniprot/P48935 P48935]
 +
** [http://www.uniprot.org/uniprot/P48933 P48933]
 +
** [http://www.uniprot.org/uniprot/P73723 P73723]
 +
** [http://www.uniprot.org/uniprot/P80481 P80481]
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** [http://www.uniprot.org/uniprot/P80482 P80482]
 +
** [http://www.uniprot.org/uniprot/P80480 P80480]
 +
** [http://www.uniprot.org/uniprot/Q9T584 Q9T584]
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** [http://www.uniprot.org/uniprot/P80479 P80479]
 +
** [http://www.uniprot.org/uniprot/P80478 P80478]
 +
** [http://www.uniprot.org/uniprot/Q09508 Q09508]
 +
** [http://www.uniprot.org/uniprot/Q59659 Q59659]
 +
** [http://www.uniprot.org/uniprot/Q9UTJ7 Q9UTJ7]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain}}
 +
{{#set: common name=SDH1, succinate dehydrogenase subunit 1}}
 +
{{#set: common name=SDH3, succinate dehydrogenase subunit 3}}
 +
{{#set: common name=SDH2, succinate dehydrogenase subunit 2}}
 +
{{#set: common name=SDH4, succinate dehydrogenase subunit 4}}
 +
{{#set: ec number=EC-1.3.5.1}}
 +
{{#set: gene associated=Ec-07_002870|Ec-07_007310|Ec-11_000360|Ec-21_003470|Ec-05_003640|Ec-27_006560}}
 +
{{#set: in pathway=PWY-561|PWY-4302|PWY-3781|PWY-7279|PWY-6728|PWY0-1329|PWY0-1353|PWY-5690|PWY66-398|TCA}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 21:24, 17 March 2018

Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
    • SDH1, succinate dehydrogenase subunit 1
    • SDH3, succinate dehydrogenase subunit 3
    • SDH2, succinate dehydrogenase subunit 2
    • SDH4, succinate dehydrogenase subunit 4
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 succinate[c] + 1 a ubiquinone[c] => 1 an ubiquinol[c] + 1 fumarate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-561, superpathway of glyoxylate cycle and fatty acid degradation: PWY-561
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-4302, aerobic respiration III (alternative oxidase pathway): PWY-4302
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-3781, aerobic respiration I (cytochrome c): PWY-3781
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7279, aerobic respiration II (cytochrome c) (yeast): PWY-7279
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY0-1329, succinate to cytochrome bo oxidase electron transfer: PWY0-1329
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1353, succinate to cytochrome bd oxidase electron transfer: PWY0-1353
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=XYLULOSE-5-PHOSPHATE&oldid=12867"