Difference between revisions of "Ec-02 005260"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Radical SAM * ec number: ** [...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.5.7-RXN 6.3.5.7-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.5.7-RXN 6.3.5.7-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Radical SAM
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.98.c EC-1.3.98.c]
+
** [http://enzyme.expasy.org/EC/6.3.5.7 EC-6.3.5.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[MET]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
+
** 1 [[GLN]][c] '''+''' 1 [[L-glutamyl-tRNAGln]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-GLN-tRNAs]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coproporphyrinogen III[c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 2 L-methionine[c] '''+''' 2 CO2[c] '''+''' 2 5'-deoxyadenosine[c] '''+''' 1 protoporphyrinogen IX[c]
+
** 1 L-glutamine[c] '''+''' 1 an L-glutamyl-[tRNAGln][c] '''+''' 1 H2O[c] '''+''' 1 ATP[c] '''=>''' 1 an L-glutaminyl-[tRNAgln][c] '''+''' 1 L-glutamate[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-14_004300]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Ec-26_002590]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-20_000950]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Ec-26_001240]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Ec-19_002210]]
 
−
** ESILICULOSUS_GENOME
 
−
***AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
+
* [[PWY-5921]], glutaminyl-tRNAgln biosynthesis via transamidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5921 PWY-5921]
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[aragem]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15425 15425]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17521 17521]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03905 R03905]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Radical SAM}}
+
{{#set: ec number=EC-6.3.5.7}}
−
{{#set: ec number=EC-1.3.98.c}}
+
{{#set: in pathway=PWY-5921}}
−
{{#set: gene associated=Ec-14_004300|Ec-26_002590|Ec-20_000950|Ec-26_001240|Ec-19_002210}}
+
−
{{#set: in pathway=PWY-5531|HEMESYN2-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=esiliculosus_genome}}
 

Revision as of 23:01, 17 March 2018

Reaction 6.3.5.7-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-glutamine[c] + 1 an L-glutamyl-[tRNAGln][c] + 1 H2O[c] + 1 ATP[c] => 1 an L-glutaminyl-[tRNAgln][c] + 1 L-glutamate[c] + 1 ADP[c] + 1 phosphate[c] + 1 H+[c]

Genes associated with this reaction

Pathways

  • PWY-5921, glutaminyl-tRNAgln biosynthesis via transamidation: PWY-5921
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




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