Difference between revisions of "PWY-5742"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7835 RXN-7835] == * direction: ** LEFT-TO-RIGHT * common name: ** NAD(P)-binding domain * ec nu...")
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7835 RXN-7835] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** formaldehyde assimilation I (serine pathway)
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** NAD(P)-binding domain
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.1.34 EC-1.3.1.34]
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
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== Reaction Formula ==
'''6''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
* [[2PGADEHYDRAT-RXN]]
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** 1 [[NADPH]][c] '''+''' 1 [[2-trans-4-cis-dienoyl-CoAs]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Trans-3-enoyl-CoAs]][c] '''+''' 1 [[NADP]][c]
** 3 associated gene(s):
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* With common name(s):
*** [[Ec-27_004000]]
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** 1 NADPH[c] '''+''' 1 a 2-trans-4-cis-dienoyl-CoA[c] '''=>''' 1 H+[c] '''+''' 1 a trans-3-enoyl-CoA[c] '''+''' 1 NADP+[c]
*** [[Ec-26_004120]]
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*** [[Ec-14_005400]]
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== Genes associated with this reaction  ==
** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-16_003950]]
*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
* [[GLYOHMETRANS-RXN]]
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*** Assignment: EC-NUMBER
** 2 associated gene(s):
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== Pathways  ==
*** [[Ec-14_004260]]
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* [[PWY-5138]], unsaturated, even numbered fatty acid β-oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5138 PWY-5138]
*** [[Ec-24_002640]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
*** [[annotation-esiliculosus_genome]]
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* Category: [[annotation]]
* [[MALATE-DEH-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
** 2 associated gene(s):
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*** Tool: [[pathwaytools]]
*** [[Ec-10_006200]]
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*** [[Ec-02_003100]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PEPCARBOX-RXN]]
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** 1 associated gene(s):
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*** [[Ec-28_003470]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-15513]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-2881]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GKI-RXN GKI-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPYRUVATE-REDUCTASE-RXN HYDROXYPYRUVATE-REDUCTASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE--COA-LIGASE-RXN MALATE--COA-LIGASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2802 RXN-2802]
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* [http://metacyc.org/META/NEW-IMAGE?object=SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN]
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== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-2}}
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=formaldehyde assimilation I (serine pathway)}}
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{{#set: common name=NAD(P)-binding domain}}
{{#set: reaction found=6}}
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{{#set: ec number=EC-1.3.1.34}}
{{#set: total reaction=13}}
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{{#set: gene associated=Ec-16_003950}}
{{#set: completion rate=46.0}}
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{{#set: in pathway=PWY-5138}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:20, 21 March 2018

Reaction RXN-7835

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • NAD(P)-binding domain
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5138, unsaturated, even numbered fatty acid β-oxidation: PWY-5138
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links