Difference between revisions of "DCMP"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7346 PWY-7346] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOISOCAPROATE-RXN KETOISOCAPROATE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-methy...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7346 PWY-7346] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOISOCAPROATE-RXN KETOISOCAPROATE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** UDP-α-D-glucuronate biosynthesis (from UDP-glucose)
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** 4-methyl-2-oxopentanoate dehydrogenase (lipoamide)
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** Dehydrogenase, E1 component
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* ec number:
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** [http://enzyme.expasy.org/EC/1.2.4.4 EC-1.2.4.4]
 
* Synonym(s):
 
* Synonym(s):
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** UDP-α-D-glucuronate biosynthesis
 
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** UDP-glucuronic acid biosynthesis (from UDP-glucose)
 
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** UDP-GlcA biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''1''' reactions in the full pathway
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* With identifiers:
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* [[UGD-RXN]]
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** 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[BCAA-dehydrogenase-3MB-DH-lipoyl]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-04_001130]]
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** 1 an [apo BCAA dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''+''' 1 4-methyl-2-oxopentanoate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a [apo BCAA dehydrogenase E2 protein] N6-S-[3-methylbutanoyl]dihydrolipoyl-L-lysine[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* Gene: [[Ec-10_006360]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* UNIPROT:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7346 PWY-7346]
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** [http://www.uniprot.org/uniprot/P21839 P21839]
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/P21953 P21953]
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.uniprot.org/uniprot/P37940 P37940]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
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{{#set: common name=UDP-α-D-glucuronate biosynthesis (from UDP-glucose)}}
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** [http://www.uniprot.org/uniprot/P37941 P37941]
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{{#set: common name=UDP-α-D-glucuronate biosynthesis|UDP-glucuronic acid biosynthesis (from UDP-glucose)|UDP-GlcA biosynthesis}}
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** [http://www.uniprot.org/uniprot/P11178 P11178]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P12694 P12694]
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{{#set: total reaction=1}}
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** [http://www.uniprot.org/uniprot/P09061 P09061]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P09060 P09060]
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** [http://www.uniprot.org/uniprot/P11960 P11960]
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** [http://www.uniprot.org/uniprot/O84344 O84344]
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** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
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** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
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** [http://www.uniprot.org/uniprot/P35738 P35738]
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** [http://www.uniprot.org/uniprot/P50136 P50136]
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** [http://www.uniprot.org/uniprot/O48615 O48615]
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** [http://www.uniprot.org/uniprot/O03849 O03849]
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** [http://www.uniprot.org/uniprot/Q53592 Q53592]
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** [http://www.uniprot.org/uniprot/Q53593 Q53593]
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** [http://www.uniprot.org/uniprot/O82450 O82450]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=4-methyl-2-oxopentanoate dehydrogenase (lipoamide)}}
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{{#set: common name=Dehydrogenase, E1 component}}
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{{#set: ec number=EC-1.2.4.4}}
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{{#set: gene associated=Ec-10_006360}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:39, 21 March 2018

Reaction KETOISOCAPROATE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 4-methyl-2-oxopentanoate dehydrogenase (lipoamide)
    • Dehydrogenase, E1 component
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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