Difference between revisions of "3.2.1.21-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate dehydrog...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.23.34-RXN 3.4.23.34-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** cathepsine B * ec n...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.23.34-RXN 3.4.23.34-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** malate dehydrogenase (decarboxylating) (NAD+)
+
** cathepsine B
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
+
** [http://enzyme.expasy.org/EC/3.4.23.34 EC-3.4.23.34]
−
** [http://enzyme.expasy.org/EC/4.1.1.3 EC-4.1.1.3]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
+
** 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxaloacetate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 pyruvate[c]
+
** 1 a protein[c] '''+''' 1 H2O[c] '''=>''' 1 a peptide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-01_003680]]
+
* Gene: [[Ec-06_006050]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-07_002070]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-07_002060]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6339]], syringate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6339 PWY-6339]
 
−
** '''1''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY]
 
−
** '''1''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 39: Line 26:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15641 15641]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P13187 P13187]
+
** [http://www.uniprot.org/uniprot/P14091 P14091]
−
** [http://www.uniprot.org/uniprot/P13155 P13155]
+
** [http://www.uniprot.org/uniprot/P16228 P16228]
−
** [http://www.uniprot.org/uniprot/P13156 P13156]
+
** [http://www.uniprot.org/uniprot/P25796 P25796]
−
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
+
** [http://www.uniprot.org/uniprot/P43159 P43159]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=malate dehydrogenase (decarboxylating) (NAD+)}}
+
{{#set: common name=cathepsine B}}
−
{{#set: ec number=EC-1.1.1.38}}
+
{{#set: ec number=EC-3.4.23.34}}
−
{{#set: ec number=EC-4.1.1.3}}
+
{{#set: gene associated=Ec-06_006050}}
−
{{#set: gene associated=Ec-01_003680|Ec-07_002070|Ec-07_002060}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=METHYLGALLATE-DEGRADATION-PWY|PWY-6339|P184-PWY}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:43, 21 March 2018

Reaction 3.4.23.34-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • cathepsine B
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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