Difference between revisions of "Ec-11 002070"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-OXOPIMELOYL-COA 3-OXOPIMELOYL-COA] == * smiles: ** CC(C)(C(O)C(=O)NCCC(=O)NCCSC(CC(CCCC([O-])...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.98-RXN 3.5.1.98-RXN] == * direction: ** REVERSIBLE * common name: ** Histone deacetylase doma...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-OXOPIMELOYL-COA 3-OXOPIMELOYL-COA] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.98-RXN 3.5.1.98-RXN] ==
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* smiles:
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* direction:
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** CC(C)(C(O)C(=O)NCCC(=O)NCCSC(CC(CCCC([O-])=O)=O)=O)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
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** REVERSIBLE
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* inchi key:
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** InChIKey=KJXFOFKTZDJLMQ-UYRKPTJQSA-I
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* common name:
 
* common name:
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** 3-oxopimeloyl-CoA
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** Histone deacetylase domain
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* molecular weight:
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** histone deacetylase
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** 918.632   
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.98 EC-3.5.1.98]
 
* Synonym(s):
 
* Synonym(s):
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** 3-oxopimelyl-CoA
 
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** 3-ketopimeloyl-CoA
 
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** 3-ketopimelyl-CoA
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[WATER]][c] '''+''' 1 [[Histone-Acetyl-Lysine]][c] '''<=>''' 1 [[Histone-L-lysine]][c] '''+''' 1 [[ACET]][c]
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* [[RXN-8032]]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 a [histone]-N6-acetyl-L-lysine[c] '''<=>''' 1 a [histone]-L-lysine[c] '''+''' 1 acetate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-05_003910]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-06_004320]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-05_003890]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-10_001980]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-28_001400]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-02_001000]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-05_006370]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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{{#set: direction=REVERSIBLE}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45266579 45266579]
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{{#set: common name=Histone deacetylase domain}}
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* CHEBI:
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{{#set: common name=histone deacetylase}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57350 57350]
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{{#set: ec number=EC-3.5.1.98}}
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* LIGAND-CPD:
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{{#set: gene associated=Ec-05_003910|Ec-06_004320|Ec-05_003890|Ec-10_001980|Ec-28_001400|Ec-02_001000|Ec-05_006370}}
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** [http://www.genome.jp/dbget-bin/www_bget?C06715 C06715]
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{{#set: in pathway=}}
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* HMDB : HMDB12158
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{{#set: reconstruction category=annotation}}
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{{#set: smiles=CC(C)(C(O)C(=O)NCCC(=O)NCCSC(CC(CCCC([O-])=O)=O)=O)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: inchi key=InChIKey=KJXFOFKTZDJLMQ-UYRKPTJQSA-I}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: common name=3-oxopimeloyl-CoA}}
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−
{{#set: molecular weight=918.632    }}
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−
{{#set: common name=3-oxopimelyl-CoA|3-ketopimeloyl-CoA|3-ketopimelyl-CoA}}
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{{#set: reversible reaction associated=RXN-8032}}
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Revision as of 13:46, 21 March 2018

Reaction 3.5.1.98-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Histone deacetylase domain
    • histone deacetylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-11_002070&oldid=21517"