Difference between revisions of "METHYLVALERATE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.21.92-RXN 3.4.21.92-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ClpP/crotonase-like...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=STRICTOSIDINE-SYNTHASE-RXN STRICTOSIDINE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.21.92-RXN 3.4.21.92-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=STRICTOSIDINE-SYNTHASE-RXN STRICTOSIDINE-SYNTHASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ClpP/crotonase-like domain
+
** strictosidine synthase
−
** obsolete endopeptidase Clp
+
−
** ATP-dependent Clp protease proteolytic subunit
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.4.21.92 EC-3.4.21.92]
+
** [http://enzyme.expasy.org/EC/4.3.3.2 EC-4.3.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
+
** 1 [[SECOLOGANIN-CPD]][c] '''+''' 1 [[TRYPTAMINE]][c] '''=>''' 1 [[STRICTOSIDINE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a protein[c] '''+''' 1 H2O[c] '''=>''' 1 a peptide[c]
+
** 1 secologanin[c] '''+''' 1 tryptamine[c] '''=>''' 1 strictosidine[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-26_005690]]
+
* Gene: [[Ec-14_004550]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: GO-TERM
−
* [[Ec-07_005420]]
+
* Gene: [[Ec-00_009940]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: GO-TERM
−
* [[Ec-19_000460]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-01_004640]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-01_010610]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
* [[Ec-13_001830]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-10_003920]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5290]], secologanin and strictosidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5290 PWY-5290]
 +
** '''1''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-6326]], camptothecin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6326 PWY-6326]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 46: Line 33:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15013 15013]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03738 R03738]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P12208 P12208]
+
** [http://www.uniprot.org/uniprot/Q9VAQ9 Q9VAQ9]
−
** [http://www.uniprot.org/uniprot/Q9JU33 Q9JU33]
+
** [http://www.uniprot.org/uniprot/P68175 P68175]
−
** [http://www.uniprot.org/uniprot/Q9PE41 Q9PE41]
+
** [http://www.uniprot.org/uniprot/P18417 P18417]
−
** [http://www.uniprot.org/uniprot/P0A6G7 P0A6G7]
+
** [http://www.uniprot.org/uniprot/P68174 P68174]
−
** [http://www.uniprot.org/uniprot/P56156 P56156]
+
−
** [http://www.uniprot.org/uniprot/P80244 P80244]
+
−
** [http://www.uniprot.org/uniprot/O51556 O51556]
+
−
** [http://www.uniprot.org/uniprot/O67357 O67357]
+
−
** [http://www.uniprot.org/uniprot/O83520 O83520]
+
−
** [http://www.uniprot.org/uniprot/Q9HYR9 Q9HYR9]
+
−
** [http://www.uniprot.org/uniprot/P63783 P63783]
+
−
** [http://www.uniprot.org/uniprot/O84712 O84712]
+
−
** [http://www.uniprot.org/uniprot/P43867 P43867]
+
−
** [http://www.uniprot.org/uniprot/O51698 O51698]
+
−
** [http://www.uniprot.org/uniprot/P0A526 P0A526]
+
−
** [http://www.uniprot.org/uniprot/Q9PLM0 Q9PLM0]
+
−
** [http://www.uniprot.org/uniprot/Q9K709 Q9K709]
+
−
** [http://www.uniprot.org/uniprot/Q9WZF9 Q9WZF9]
+
−
** [http://www.uniprot.org/uniprot/Q9RSZ7 Q9RSZ7]
+
−
** [http://www.uniprot.org/uniprot/Q9I2U1 Q9I2U1]
+
−
** [http://www.uniprot.org/uniprot/Q9K888 Q9K888]
+
−
** [http://www.uniprot.org/uniprot/P38002 P38002]
+
−
** [http://www.uniprot.org/uniprot/Q9Z759 Q9Z759]
+
−
** [http://www.uniprot.org/uniprot/Q9Z832 Q9Z832]
+
−
** [http://www.uniprot.org/uniprot/P54413 P54413]
+
−
** [http://www.uniprot.org/uniprot/Q9KQS6 Q9KQS6]
+
−
** [http://www.uniprot.org/uniprot/Q9ZD29 Q9ZD29]
+
−
** [http://www.uniprot.org/uniprot/Q9ZL50 Q9ZL50]
+
−
** [http://www.uniprot.org/uniprot/P12209 P12209]
+
−
** [http://www.uniprot.org/uniprot/Q7M2F6 Q7M2F6]
+
−
** [http://www.uniprot.org/uniprot/P24064 P24064]
+
−
** [http://www.uniprot.org/uniprot/P36387 P36387]
+
−
** [http://www.uniprot.org/uniprot/P26567 P26567]
+
−
** [http://www.uniprot.org/uniprot/P48883 P48883]
+
−
** [http://www.uniprot.org/uniprot/Q16740 Q16740]
+
−
** [http://www.uniprot.org/uniprot/P54416 P54416]
+
−
** [http://www.uniprot.org/uniprot/Q59993 Q59993]
+
−
** [http://www.uniprot.org/uniprot/P74467 P74467]
+
−
** [http://www.uniprot.org/uniprot/P30063 P30063]
+
−
** [http://www.uniprot.org/uniprot/Q36863 Q36863]
+
−
** [http://www.uniprot.org/uniprot/Q42886 Q42886]
+
−
** [http://www.uniprot.org/uniprot/P56317 P56317]
+
−
** [http://www.uniprot.org/uniprot/P41609 P41609]
+
−
** [http://www.uniprot.org/uniprot/Q9X7R9 Q9X7R9]
+
−
** [http://www.uniprot.org/uniprot/O48931 O48931]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ClpP/crotonase-like domain}}
+
{{#set: common name=strictosidine synthase}}
−
{{#set: common name=obsolete endopeptidase Clp}}
+
{{#set: ec number=EC-4.3.3.2}}
−
{{#set: common name=ATP-dependent Clp protease proteolytic subunit}}
+
{{#set: gene associated=Ec-14_004550|Ec-00_009940}}
−
{{#set: ec number=EC-3.4.21.92}}
+
{{#set: in pathway=PWY-5290|PWY-6326}}
−
{{#set: gene associated=Ec-26_005690|Ec-07_005420|Ec-19_000460|Ec-01_004640|Ec-01_010610|Ec-13_001830|Ec-10_003920}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:56, 21 March 2018

Reaction STRICTOSIDINE-SYNTHASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • strictosidine synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5290, secologanin and strictosidine biosynthesis: PWY-5290
    • 1 reactions found over 13 reactions in the full pathway
  • PWY-6326, camptothecin biosynthesis: PWY-6326
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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