aureme --run=e_faecalis_v583 --cmd="check_input" aureme --run=e_faecalis_v583 --cmd="orthology_based" aureme --run=e_faecalis_v583 --cmd="draft" aureme --run=e_faecalis_v583 --cmd="curation NETWORK=draft NEW_NETWORK=draft_curated DATA=1_new_rxn_for_biomass.csv" aureme --run=e_faecalis_v583 --cmd="curation NETWORK=draft_curated DATA=2_reaction_to_add_delete.csv" aureme --run=e_faecalis_v583 --cmd="set_medium NETWORK=draft_curated NEW_NETWORK=draft_medium" aureme --run=e_faecalis_v583 --cmd="gap_filling NETWORK=draft_medium NEW_NETWORK=draft_gapfilled" aureme --run=e_faecalis_v583 --cmd="curation NETWORK=draft_gapfilled NEW_NETWORK=efaecalisV583_final DATA=3_rxn_to_delete.csv" aureme --run=e_faecalis_v583 --cmd="curation NETWORK=efaecalisV583_final DATA=4_NewReactions.csv" aureme --run=e_faecalis_v583 --cmd="set_fba ID=biomass_LPL60 NETWORK=efaecalisV583_final" aureme --run=e_faecalis_v583 --cmd="summary NETWORK=efaecalisV583_final" aureme --run=e_faecalis_v583 --cmd="wiki_pages NETWORK=efaecalisV583_final ID=EFAEV583 NAME=Enterococcus_faecalis_str_v583"