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| Line 1: |
Line 1: |
| − | [[Category:Pathway]] | + | [[Category:Gene]] |
| − | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900] == | + | == Gene EF2550 == |
| − | * common_name:
| + | |
| − | ** Terpenoid backbone biosynthesis
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction(s) found == | + | == Reactions associated == |
| − | '''14''' reactions found over '''67''' reactions in the full pathway
| + | * Reaction: [[ALATA_D2]] |
| − | * [[ACACT1r]] | + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| − | ** 1 associated gene(s):
| + | * Reaction: [[ALATA_L2]] |
| − | *** [[EF1364]]
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| − | ** 2 reconstruction source(s) associated: | + | * Reaction: [[GHMT2r]] |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | ** Source: [[orthology-l_plantarum_wcfs1]] |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]] | + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| − | * [[CDPMEK]]
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] |
| − | ** 1 associated gene(s):
| + | * Reaction: [[THFAT]] |
| − | *** [[EF0051]]
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| − | ** 3 reconstruction source(s) associated: | + | * Reaction: [[THRA2i]] |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]] | + | * Reaction: [[THRAi]] |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] |
| − | * [[DMATT]]
| + | == Pathways associated == |
| − | ** 1 associated gene(s):
| + | * [[map01100]] |
| − | *** [[EF0981]]
| + | * [[map00630]] |
| − | ** 3 reconstruction source(s) associated: | + | * [[map01110]] |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | * [[map01120]] |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | * [[map00460]] |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | * [[map01200]] |
| − | * [[DPMVD]] | + | * [[map01230]] |
| − | ** 1 associated gene(s): | + | * [[map00680]] |
| − | *** [[EF0903]]
| + | * [[map00260]] |
| − | ** 1 reconstruction source(s) associated:
| + | * [[map01130]] |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | * [[map00670]] |
| − | * [[DXPS]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[EF1354]]
| + | |
| − | *** [[EF1659]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
| − | * [[GRTT]] | + | |
| − | ** 1 associated gene(s): | + | |
| − | *** [[EF0981]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
| − | *** [[orthology-l_plantarum_wcfs1]] | + | |
| − | * [[HMGCOAR]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF1364]]
| + | |
| − | ** 1 reconstruction source(s) associated: | + | |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | |
| − | * [[HMGCOAS]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF1363]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | |
| − | * [[IPDDI]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF0901]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]]
| + | |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | |
| − | * [[MECDPS]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF0042]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]] | + | |
| − | * [[MEPCT]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF2172]]
| + | |
| − | ** 2 reconstruction source(s) associated: | + | |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
| − | *** [[orthology-b_subtilis_subsp_subtilis_str168]] | + | |
| − | * [[MEVK1]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF0904]]
| + | |
| − | ** 1 reconstruction source(s) associated: | + | |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | |
| − | * [[OCTDPS]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[EF2057]]
| + | |
| − | *** [[EF3260]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-e_coli_sstr_k12_substr_mg1655]]
| + | |
| − | * [[PMEVK]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[EF0902]]
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-l_plantarum_wcfs1]]
| + | |
| − | == Reaction(s) not found == | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT2r ACACT2r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT3r ACACT3r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT4r ACACT4r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/ACACT7r ACACT7r]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/CMK CMK] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/CMS CMS]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DMATTx DMATTx]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DMPPS DMPPS] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DPMVDx DPMVDx]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DPPS DPPS]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DXPRIi DXPRIi] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DXRI DXRI]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/DXS DXS]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/FPPSh FPPSh] | + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/FRTT FRTT]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GGDPR GGDPR]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GGDR GGDR]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GGPS_1 GGPS_1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GPPSh GPPSh]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/GRTTx GRTTx]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HMGCOARr HMGCOARr]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HMGCOARx HMGCOARx]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/HMGCOASm HMGCOASm]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/IDIh IDIh]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/IDS1 IDS1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/IPDDIx IPDDIx]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/IPDPS_syn IPDPS_syn]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MACCOAT MACCOAT]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MCS MCS]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MEVK1x MEVK1x]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MEVK2 MEVK2]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MEVK3 MEVK3]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MEVK4 MEVK4]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/MHGS MHGS]
| + | |
| − | * [http://bigg.ucsd.edu/universal/reactions/PMEVKx PMEVKx]
| + | |
| | == External links == | | == External links == |
| − | {{#set: common_name=Terpenoid backbone biosynthesis}} | + | {{#set: reaction associated=ALATA_D2|ALATA_L2|GHMT2r|THFAT|THRA2i|THRAi}} |
| − | {{#set: reaction found=14}}
| + | {{#set: pathway associated=map01100|map00630|map01110|map01120|map00460|map01200|map01230|map00680|map00260|map01130|map00670}} |
| − | {{#set: total reaction=67}}
| + | |
| − | {{#set: completion rate=21.0}} | + | |
