Difference between revisions of "GRTT"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290] == * common_name: ** Valine, leucine and isoleucine biosynthesis * Synonym(s): ==...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GRTT GRTT] == * direction: ** LEFT-TO-RIGHT * common name: ** Geranyltranstransferase * Synonym(s):...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/GRTT GRTT] ==
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* common_name:
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* direction:
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** Valine, leucine and isoleucine biosynthesis
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** LEFT-TO-RIGHT
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* common name:
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** Geranyltranstransferase
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''9''' reactions found over '''49''' reactions in the full pathway
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* With identifiers:
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* [[ACHBS]]
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** 1.0 [[ipdp]][c] '''+''' 1.0 [[grdp]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[frdp]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[EF1213]]
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** 1.0 Isopentenyl diphosphate[c] '''+''' 1.0 Geranyl diphosphate[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 Farnesyl diphosphate[c]
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** 2 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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== Genes associated with this reaction  ==
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*** [[orthology-l_plantarum_wcfs1]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[ACLS]]
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* Gene: [[EF0981]]
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** 1 associated gene(s):
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** Source: [[orthology-l_plantarum_wcfs1]]
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*** [[EF1213]]
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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== Pathways  ==
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*** [[orthology-l_plantarum_wcfs1]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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* [[ILETA]]
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** '''460''' reactions found over '''2349''' reactions in the full pathway
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** 1 associated gene(s):
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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*** [[EF1793]]
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** '''135''' reactions found over '''694''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** '''179''' reactions found over '''1054''' reactions in the full pathway
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
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*** [[orthology-l_plantarum_wcfs1]]
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** '''14''' reactions found over '''67''' reactions in the full pathway
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* [[IPPS]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[orthology]]
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*** [[EF3317]]
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** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
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* [[LEUTA]]
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*** Tool: [[pantograph]]
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** 1 associated gene(s):
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** Source: [[orthology-l_plantarum_wcfs1]]
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*** [[EF1793]]
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*** Tool: [[pantograph]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[LEUTAi]]
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** 1 associated gene(s):
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*** [[EF1793]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[SERD_L]]
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** 4 associated gene(s):
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*** [[EF0099]]
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*** [[EF2722]]
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*** [[EF0098]]
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*** [[EF2721]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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* [[THRD_L]]
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** 1 associated gene(s):
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*** [[EF2421]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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* [[VALTA]]
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** 1 associated gene(s):
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*** [[EF1793]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-e_coli_sstr_k12_substr_mg1655]]
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*** [[orthology-b_subtilis_subsp_subtilis_str168]]
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*** [[orthology-l_plantarum_wcfs1]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/ACAS_2ahbut ACAS_2ahbut]
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* [http://bigg.ucsd.edu/universal/reactions/ACHBSm ACHBSm]
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* [http://bigg.ucsd.edu/universal/reactions/ACLSm ACLSm]
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* [http://bigg.ucsd.edu/universal/reactions/APLh APLh]
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* [http://bigg.ucsd.edu/universal/reactions/APLm APLm]
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* [http://bigg.ucsd.edu/universal/reactions/BCTA_glu_h BCTA_glu_h]
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* [http://bigg.ucsd.edu/universal/reactions/BCTA_val_h BCTA_val_h]
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* [http://bigg.ucsd.edu/universal/reactions/BCTAh BCTAh]
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* [http://bigg.ucsd.edu/universal/reactions/CITCIb CITCIb]
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* [http://bigg.ucsd.edu/universal/reactions/DHAD1 DHAD1]
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* [http://bigg.ucsd.edu/universal/reactions/DHAD1m DHAD1m]
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* [http://bigg.ucsd.edu/universal/reactions/DHAD2 DHAD2]
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* [http://bigg.ucsd.edu/universal/reactions/DHAD2m DHAD2m]
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* [http://bigg.ucsd.edu/universal/reactions/DHAD_3mob_h DHAD_3mob_h]
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* [http://bigg.ucsd.edu/universal/reactions/DHADh DHADh]
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* [http://bigg.ucsd.edu/universal/reactions/DMORh DMORh]
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* [http://bigg.ucsd.edu/universal/reactions/ILETAm ILETAm]
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* [http://bigg.ucsd.edu/universal/reactions/IPMD IPMD]
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* [http://bigg.ucsd.edu/universal/reactions/IPPMIa IPPMIa]
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* [http://bigg.ucsd.edu/universal/reactions/IPPMIb IPPMIb]
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* [http://bigg.ucsd.edu/universal/reactions/IPPSh IPPSh]
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* [http://bigg.ucsd.edu/universal/reactions/IPPSm IPPSm]
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* [http://bigg.ucsd.edu/universal/reactions/KARA1 KARA1]
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* [http://bigg.ucsd.edu/universal/reactions/KARA1im KARA1im]
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* [http://bigg.ucsd.edu/universal/reactions/KARA2 KARA2]
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* [http://bigg.ucsd.edu/universal/reactions/KARA2im KARA2im]
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* [http://bigg.ucsd.edu/universal/reactions/KARI KARI]
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* [http://bigg.ucsd.edu/universal/reactions/KARI_23dhmb KARI_23dhmb]
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* [http://bigg.ucsd.edu/universal/reactions/KARI_23dhmp KARI_23dhmp]
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* [http://bigg.ucsd.edu/universal/reactions/KARI_3hmoa KARI_3hmoa]
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* [http://bigg.ucsd.edu/universal/reactions/LEUTAm LEUTAm]
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* [http://bigg.ucsd.edu/universal/reactions/OMCDC OMCDC]
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* [http://bigg.ucsd.edu/universal/reactions/OMCDCm OMCDCm]
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* [http://bigg.ucsd.edu/universal/reactions/PPATDh PPATDh]
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* [http://bigg.ucsd.edu/universal/reactions/SER_AL SER_AL]
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* [http://bigg.ucsd.edu/universal/reactions/TAL TAL]
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* [http://bigg.ucsd.edu/universal/reactions/THRAL THRAL]
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* [http://bigg.ucsd.edu/universal/reactions/THRD_Lm THRD_Lm]
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* [http://bigg.ucsd.edu/universal/reactions/VALTAim VALTAim]
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* [http://bigg.ucsd.edu/universal/reactions/VPAMTr VPAMTr]
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== External links  ==
 
== External links  ==
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{{#set: common_name=Valine, leucine and isoleucine biosynthesis}}
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* EC Number : 2.5.1.10
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{{#set: reaction found=9}}
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* BioCyc : META:FPPSYN-RXN
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{{#set: total reaction=49}}
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* MetaNetX (MNX) Equation : MNXR99634
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{{#set: completion rate=18.0}}
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* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
 +
* Reactome : REACT_R-ATH-191303
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* KEGG Reaction : R02003
 +
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Geranyltranstransferase}}
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{{#set: gene associated=EF0981}}
 +
{{#set: in pathway=map01100|map01130|map01110|map00900}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:25, 21 March 2018

Reaction GRTT

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Geranyltranstransferase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Isopentenyl diphosphate[c] + 1.0 Geranyl diphosphate[c] => 1.0 Diphosphate[c] + 1.0 Farnesyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 2.5.1.10
  • BioCyc : META:FPPSYN-RXN
  • MetaNetX (MNX) Equation : MNXR99634
  • RHEA:
  • Reactome : REACT_R-ATH-191303
  • KEGG Reaction : R02003




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