Difference between revisions of "ORNDC"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PTRCabc PTRCabc] == * direction: ** LEFT-TO-RIGHT * common name: ** Putrescine transport via ABC sy...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ORNDC ORNDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Ornithine Decarboxylase * Synonym(s...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PTRCabc PTRCabc] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/ORNDC ORNDC] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Putrescine transport via ABC system
+
** Ornithine Decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[ptrc]][e] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[ptrc]][c] '''+''' 1.0 [[pi]][c]
+
** 1.0 [[orn]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[ptrc]][c] '''+''' 1.0 [[co2]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Putrescine[e] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 Putrescine[c] '''+''' 1.0 Phosphate[c]
+
** 1.0 Ornithine[c] '''+''' 1.0 H+[c] '''=>''' 1.0 Putrescine[c] '''+''' 1.0 CO2 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[EF2649]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
* [[EF2650]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
* [[EF2651]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
−
* [[EF2652]]
 
−
** [[pantograph]]-[[l_plantarum_wcfs1]]
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''460''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
 +
** '''10''' reactions found over '''39''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
 +
** '''22''' reactions found over '''149''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[gap-filling]]
−
** Source: [[orthology-l_plantarum_wcfs1]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 4.1.1.17
 +
* BioCyc : META:ORNDECARBOX-RXN
 +
* MetaNetX (MNX) Equation : MNXR102209
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29995#1 29995#1]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22964 22964]
−
* MetaNetX (MNX) Equation : MNXR103338
+
* Reactome : REACT_R-ATH-70692
−
* EC Number : 3.6.3.31
+
* KEGG Reaction : R00670
−
* BioCyc : META:ABC-25-RXN
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Putrescine transport via ABC system}}
+
{{#set: common name=Ornithine Decarboxylase}}
−
{{#set: gene associated=EF2649|EF2650|EF2651|EF2652}}
+
{{#set: in pathway=map01100|map01130|map00480|map01110|map00330}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=orthology-l_plantarum_wcfs1}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 16:27, 21 March 2018

Reaction ORNDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ornithine Decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Ornithine[c] + 1.0 H+[c] => 1.0 Putrescine[c] + 1.0 CO2 CO2[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • EC Number : 4.1.1.17
  • BioCyc : META:ORNDECARBOX-RXN
  • MetaNetX (MNX) Equation : MNXR102209
  • RHEA:
  • Reactome : REACT_R-ATH-70692
  • KEGG Reaction : R00670




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