Difference between revisions of "RNDR2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MOHMT MOHMT] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-methyl-2-oxobutanoate hydroxymeth...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR2 RNDR2] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diphosphate reductas...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MOHMT MOHMT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR2 RNDR2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-methyl-2-oxobutanoate hydroxymethyltransferase
+
** Ribonucleoside-diphosphate reductase (GDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[mlthf]][c] '''+''' 1.0 [[3mob]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[thf]][c] '''+''' 1.0 [[2dhp]][c]
+
** 1.0 [[trdrd]][c] '''+''' 1.0 [[gdp]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[dgdp]][c] '''+''' 1.0 [[trdox]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 5,10-Methylenetetrahydrofolate[c] '''+''' 1.0 3-Methyl-2-oxobutanoate[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 5,6,7,8-Tetrahydrofolate[c] '''+''' 1.0 2-Dehydropantoate[c]
+
** 1.0 Reduced thioredoxin[c] '''+''' 1.0 GDP C10H12N5O11P2[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 DGDP C10H12N5O10P2[c] '''+''' 1.0 Oxidized thioredoxin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF1860]]
+
* Gene: [[EF0472]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
+
* Gene: [[EF0470]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF0471]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''82''' reactions found over '''244''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
 
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
−
** '''179''' reactions found over '''1054''' reactions in the full pathway
+
** '''10''' reactions found over '''39''' reactions in the full pathway
−
* [[map00770]]: [http://www.genome.jp/dbget-bin/www_bget?map00770 map00770]
+
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
−
** '''17''' reactions found over '''75''' reactions in the full pathway
+
** '''97''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* BioCyc : META:GDPREDUCT-RXN
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11824 11824]
+
* MetaNetX (MNX) Equation : MNXR104062
−
* MetaNetX (MNX) Equation : MNXR101702
+
* KEGG Reaction : R02019
−
* KEGG Reaction : R01226
+
* EC Number : 1.17.4.1
−
* EC Number : 2.1.2.11
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-methyl-2-oxobutanoate hydroxymethyltransferase}}
+
{{#set: common name=Ribonucleoside-diphosphate reductase (GDP)}}
−
{{#set: gene associated=EF1860}}
+
{{#set: gene associated=EF0472|EF0470|EF0471}}
−
{{#set: in pathway=map01100|map01110|map00770}}
+
{{#set: in pathway=map00240|map01100|map00480|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168}}
+
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:28, 21 March 2018

Reaction RNDR2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonucleoside-diphosphate reductase (GDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Reduced thioredoxin[c] + 1.0 GDP C10H12N5O11P2[c] => 1.0 H2O H2O[c] + 1.0 DGDP C10H12N5O10P2[c] + 1.0 Oxidized thioredoxin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • BioCyc : META:GDPREDUCT-RXN
  • MetaNetX (MNX) Equation : MNXR104062
  • KEGG Reaction : R02019
  • EC Number : 1.17.4.1




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