Difference between revisions of "SDPDS"
From metabolic_network
(Created page with "Category:Metabolite == Metabolite [http://bigg.ucsd.edu/universal/metabolites/2mecdp 2mecdp] == * common name: ** 2-C-methyl-D-erythritol 2,4-cyclodiphosphate * Synonym(s)...") |
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinyl-diaminopimelate desuccinyl...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/SDPDS SDPDS] == |
| + | * direction: | ||
| + | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
| − | ** | + | ** Succinyl-diaminopimelate desuccinylase |
* Synonym(s): | * Synonym(s): | ||
| − | == Reaction(s) | + | == Reaction Formula == |
| − | == | + | * With identifiers: |
| − | * [[ | + | ** 1.0 [[h2o]][c] '''+''' 1.0 [[sl26da]][c] '''=>''' 1.0 [[26dap_LL]][c] '''+''' 1.0 [[succ]][c] |
| − | == | + | * With common name(s): |
| + | ** 1.0 H2O H2O[c] '''+''' 1.0 N-Succinyl-LL-2,6-diaminoheptanedioate[c] '''=>''' 1.0 LL-2,6-Diaminoheptanedioate[c] '''+''' 1.0 Succinate[c] | ||
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[EF3178]] | ||
| + | ** Source: [[orthology-l_plantarum_wcfs1]] | ||
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] | ||
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ||
| + | == Pathways == | ||
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] | ||
| + | ** '''460''' reactions found over '''2349''' reactions in the full pathway | ||
| + | * [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230] | ||
| + | ** '''56''' reactions found over '''228''' reactions in the full pathway | ||
| + | * [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120] | ||
| + | ** '''104''' reactions found over '''715''' reactions in the full pathway | ||
| + | * [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300] | ||
| + | ** '''13''' reactions found over '''34''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-e_coli_sstr_k12_substr_mg1655]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-b_subtilis_subsp_subtilis_str168]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-l_plantarum_wcfs1]] | ||
| + | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
| − | {{#set: common name= | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22608 22608] |
| + | * BioCyc : META:SUCCDIAMINOPIMDESUCC-RXN | ||
| + | * MetaNetX (MNX) Equation : MNXR104300 | ||
| + | * KEGG Reaction : R02734 | ||
| + | * EC Number : 3.5.1.18 | ||
| + | {{#set: direction=LEFT-TO-RIGHT}} | ||
| + | {{#set: common name=Succinyl-diaminopimelate desuccinylase}} | ||
| + | {{#set: gene associated=EF3178}} | ||
| + | {{#set: in pathway=map01100|map01230|map01120|map00300}} | ||
| + | {{#set: reconstruction category=orthology}} | ||
| + | {{#set: reconstruction source=orthology-e_coli_sstr_k12_substr_mg1655|orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}} | ||
| + | {{#set: reconstruction tool=pantograph}} | ||
Latest revision as of 15:29, 21 March 2018
Contents
Reaction SDPDS
- direction:
- LEFT-TO-RIGHT
- common name:
- Succinyl-diaminopimelate desuccinylase
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1.0 H2O H2O[c] + 1.0 N-Succinyl-LL-2,6-diaminoheptanedioate[c] => 1.0 LL-2,6-Diaminoheptanedioate[c] + 1.0 Succinate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: EF3178
Pathways
- map01100: map01100
- 460 reactions found over 2349 reactions in the full pathway
- map01230: map01230
- 56 reactions found over 228 reactions in the full pathway
- map01120: map01120
- 104 reactions found over 715 reactions in the full pathway
- map00300: map00300
- 13 reactions found over 34 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-e_coli_sstr_k12_substr_mg1655
- Tool: pantograph
- Source: orthology-b_subtilis_subsp_subtilis_str168
- Tool: pantograph
- Source: orthology-l_plantarum_wcfs1
- Tool: pantograph
- Source: orthology-e_coli_sstr_k12_substr_mg1655
External links
- RHEA:
- BioCyc : META:SUCCDIAMINOPIMDESUCC-RXN
- MetaNetX (MNX) Equation : MNXR104300
- KEGG Reaction : R02734
- EC Number : 3.5.1.18
